Hb_001019_170

Information

Type -
Description -
Location Contig1019: 226845-229400
Sequence    

Annotation

kegg
ID rcu:RCOM_0220630
description hypothetical protein
nr
ID XP_012078732.1
description PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJC5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00939: 227172-228806 , PASA_asmbl_00940: 226952-229760 , PASA_asmbl_00941: 227172-229760
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001019_170 0.0 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
2 Hb_008714_020 0.0623090426 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
3 Hb_008695_120 0.063772905 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
4 Hb_003581_120 0.0657577615 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
5 Hb_002400_180 0.0657975628 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000076_080 0.067848841 - - PREDICTED: protein MOS2 [Jatropha curcas]
7 Hb_006913_040 0.0684509056 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
8 Hb_001829_010 0.0691446997 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
9 Hb_003362_040 0.0698791106 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
10 Hb_002097_090 0.0731315331 - - Splicing factor 3A subunit, putative [Ricinus communis]
11 Hb_031091_010 0.0753296056 - - crooked neck protein, putative [Ricinus communis]
12 Hb_001504_160 0.075339014 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
13 Hb_002235_320 0.0766241834 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
14 Hb_000236_370 0.0769261111 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
15 Hb_000046_450 0.0773448322 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
16 Hb_007416_310 0.0782706834 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
17 Hb_000684_420 0.0783300127 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
18 Hb_000803_300 0.0785459902 - - nuclear movement protein nudc, putative [Ricinus communis]
19 Hb_000645_150 0.0793499018 - - zinc finger protein, putative [Ricinus communis]
20 Hb_000814_090 0.0807128663 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001019_170 Hb_001019_170 Hb_008714_020 Hb_008714_020 Hb_001019_170--Hb_008714_020 Hb_008695_120 Hb_008695_120 Hb_001019_170--Hb_008695_120 Hb_003581_120 Hb_003581_120 Hb_001019_170--Hb_003581_120 Hb_002400_180 Hb_002400_180 Hb_001019_170--Hb_002400_180 Hb_000076_080 Hb_000076_080 Hb_001019_170--Hb_000076_080 Hb_006913_040 Hb_006913_040 Hb_001019_170--Hb_006913_040 Hb_010180_040 Hb_010180_040 Hb_008714_020--Hb_010180_040 Hb_001040_160 Hb_001040_160 Hb_008714_020--Hb_001040_160 Hb_027028_020 Hb_027028_020 Hb_008714_020--Hb_027028_020 Hb_000699_250 Hb_000699_250 Hb_008714_020--Hb_000699_250 Hb_000046_450 Hb_000046_450 Hb_008714_020--Hb_000046_450 Hb_008695_120--Hb_003581_120 Hb_031091_010 Hb_031091_010 Hb_008695_120--Hb_031091_010 Hb_000322_100 Hb_000322_100 Hb_008695_120--Hb_000322_100 Hb_008695_120--Hb_002400_180 Hb_002942_160 Hb_002942_160 Hb_008695_120--Hb_002942_160 Hb_003581_120--Hb_002400_180 Hb_002097_090 Hb_002097_090 Hb_003581_120--Hb_002097_090 Hb_000803_300 Hb_000803_300 Hb_003581_120--Hb_000803_300 Hb_000034_050 Hb_000034_050 Hb_003581_120--Hb_000034_050 Hb_000684_420 Hb_000684_420 Hb_002400_180--Hb_000684_420 Hb_004678_060 Hb_004678_060 Hb_002400_180--Hb_004678_060 Hb_002400_180--Hb_000803_300 Hb_002400_180--Hb_002097_090 Hb_002400_180--Hb_000034_050 Hb_001504_160 Hb_001504_160 Hb_000076_080--Hb_001504_160 Hb_004724_360 Hb_004724_360 Hb_000076_080--Hb_004724_360 Hb_000076_080--Hb_000684_420 Hb_000076_080--Hb_002097_090 Hb_000076_080--Hb_002400_180 Hb_000186_280 Hb_000186_280 Hb_000076_080--Hb_000186_280 Hb_000645_150 Hb_000645_150 Hb_006913_040--Hb_000645_150 Hb_001829_010 Hb_001829_010 Hb_006913_040--Hb_001829_010 Hb_002820_040 Hb_002820_040 Hb_006913_040--Hb_002820_040 Hb_006913_040--Hb_002097_090 Hb_000333_100 Hb_000333_100 Hb_006913_040--Hb_000333_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
156.792 101.228 42.0431 49.5902 172.714 225.616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
117.043 60.7149 88.0284 67.0616 28.8895

CAGE analysis