Hb_010180_040

Information

Type -
Description -
Location Contig10180: 63588-69565
Sequence    

Annotation

kegg
ID rcu:RCOM_0215280
description hypothetical protein
nr
ID XP_012089704.1
description PREDICTED: prosaposin isoform X1 [Jatropha curcas]
swissprot
ID Q8C1C1
description Proactivator polypeptide-like 1 OS=Mus musculus GN=Psapl1 PE=1 SV=2
trembl
ID A0A067JS17
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00372 PE=4 SV=1
Gene Ontology
ID GO:0006629
description proactivator polypeptide-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00894: 61398-62797 , PASA_asmbl_00895: 63620-69473
cDNA
(Sanger)
(ID:Location)		 049_F18.ab1: 63651-69168

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010180_040 0.0 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]
2 Hb_008714_020 0.0643408984 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
3 Hb_005494_020 0.0693234286 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
4 Hb_015763_030 0.0769819728 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000347_130 0.0777768749 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
6 Hb_000046_450 0.0793570395 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
7 Hb_000160_220 0.080800471 - - PREDICTED: protein AAR2 homolog isoform X1 [Jatropha curcas]
8 Hb_042487_010 0.0811690326 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
9 Hb_004037_030 0.0822123545 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
10 Hb_002235_320 0.0826440821 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
11 Hb_056196_050 0.0827505212 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
12 Hb_021409_170 0.0836916497 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
13 Hb_000567_010 0.0838722551 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
14 Hb_000699_250 0.0843847172 - - Poly(rC)-binding protein, putative [Ricinus communis]
15 Hb_000600_070 0.0845192563 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
16 Hb_027028_020 0.0848513654 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
17 Hb_001040_160 0.0856867189 - - glutaredoxin, grx, putative [Ricinus communis]
18 Hb_000029_320 0.0862871595 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
19 Hb_000567_050 0.086801648 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
20 Hb_003124_130 0.0875604699 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010180_040 Hb_010180_040 Hb_008714_020 Hb_008714_020 Hb_010180_040--Hb_008714_020 Hb_005494_020 Hb_005494_020 Hb_010180_040--Hb_005494_020 Hb_015763_030 Hb_015763_030 Hb_010180_040--Hb_015763_030 Hb_000347_130 Hb_000347_130 Hb_010180_040--Hb_000347_130 Hb_000046_450 Hb_000046_450 Hb_010180_040--Hb_000046_450 Hb_000160_220 Hb_000160_220 Hb_010180_040--Hb_000160_220 Hb_001019_170 Hb_001019_170 Hb_008714_020--Hb_001019_170 Hb_001040_160 Hb_001040_160 Hb_008714_020--Hb_001040_160 Hb_027028_020 Hb_027028_020 Hb_008714_020--Hb_027028_020 Hb_000699_250 Hb_000699_250 Hb_008714_020--Hb_000699_250 Hb_008714_020--Hb_000046_450 Hb_000567_010 Hb_000567_010 Hb_005494_020--Hb_000567_010 Hb_029142_010 Hb_029142_010 Hb_005494_020--Hb_029142_010 Hb_003935_030 Hb_003935_030 Hb_005494_020--Hb_003935_030 Hb_002960_160 Hb_002960_160 Hb_005494_020--Hb_002960_160 Hb_003428_070 Hb_003428_070 Hb_005494_020--Hb_003428_070 Hb_005494_020--Hb_000347_130 Hb_000029_320 Hb_000029_320 Hb_015763_030--Hb_000029_320 Hb_003464_020 Hb_003464_020 Hb_015763_030--Hb_003464_020 Hb_002070_070 Hb_002070_070 Hb_015763_030--Hb_002070_070 Hb_021409_170 Hb_021409_170 Hb_015763_030--Hb_021409_170 Hb_001085_320 Hb_001085_320 Hb_015763_030--Hb_001085_320 Hb_000600_070 Hb_000600_070 Hb_000347_130--Hb_000600_070 Hb_003966_030 Hb_003966_030 Hb_000347_130--Hb_003966_030 Hb_000347_130--Hb_000567_010 Hb_025012_010 Hb_025012_010 Hb_000347_130--Hb_025012_010 Hb_000347_130--Hb_003428_070 Hb_000046_450--Hb_000699_250 Hb_006816_300 Hb_006816_300 Hb_000046_450--Hb_006816_300 Hb_025477_060 Hb_025477_060 Hb_000046_450--Hb_025477_060 Hb_000046_450--Hb_001019_170 Hb_007849_020 Hb_007849_020 Hb_000046_450--Hb_007849_020 Hb_058702_010 Hb_058702_010 Hb_000160_220--Hb_058702_010 Hb_000567_050 Hb_000567_050 Hb_000160_220--Hb_000567_050 Hb_010931_040 Hb_010931_040 Hb_000160_220--Hb_010931_040 Hb_187739_020 Hb_187739_020 Hb_000160_220--Hb_187739_020 Hb_000160_220--Hb_003428_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
301.614 210.583 70.1357 158.225 321.286 486.395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
182.953 80.34 109.278 152.546 89.9515

CAGE analysis