Hb_029142_010

Information

Type -
Description -
Location Contig29142: 3775-5613
Sequence    

Annotation

kegg
ID vvi:100258019
description H/ACA ribonucleoprotein complex subunit 4
nr
ID XP_012078828.1
description PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
swissprot
ID O43102
description Centromere/microtubule-binding protein cbf5 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cbf5 PE=2 SV=1
trembl
ID A0A067KKT9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13359 PE=4 SV=1
Gene Ontology
ID GO:0003723
description h aca ribonucleoprotein complex subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029142_010 0.0 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
2 Hb_005494_020 0.0552457912 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
3 Hb_005122_080 0.0637566761 - - prokaryotic DNA topoisomerase, putative [Ricinus communis]
4 Hb_000567_010 0.0673342192 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
5 Hb_000107_040 0.0678546323 - - nuclear pore complex protein nup153, putative [Ricinus communis]
6 Hb_000023_060 0.0717832648 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
7 Hb_000997_030 0.074118047 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
8 Hb_042487_010 0.0785426841 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
9 Hb_067345_010 0.0823476501 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
10 Hb_030565_090 0.0844241272 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
11 Hb_000340_160 0.0864154242 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
12 Hb_001900_110 0.0864321024 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
13 Hb_003124_130 0.087184499 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
14 Hb_001028_070 0.0872474879 - - PREDICTED: WD repeat-containing protein 75 isoform X2 [Jatropha curcas]
15 Hb_000699_250 0.0876684206 - - Poly(rC)-binding protein, putative [Ricinus communis]
16 Hb_003623_030 0.0876808208 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]
17 Hb_003935_030 0.0882035612 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
18 Hb_002163_010 0.0895483434 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
19 Hb_004970_150 0.09018307 - - PREDICTED: uncharacterized protein LOC105633636 [Jatropha curcas]
20 Hb_000244_220 0.0919047522 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_029142_010 Hb_029142_010 Hb_005494_020 Hb_005494_020 Hb_029142_010--Hb_005494_020 Hb_005122_080 Hb_005122_080 Hb_029142_010--Hb_005122_080 Hb_000567_010 Hb_000567_010 Hb_029142_010--Hb_000567_010 Hb_000107_040 Hb_000107_040 Hb_029142_010--Hb_000107_040 Hb_000023_060 Hb_000023_060 Hb_029142_010--Hb_000023_060 Hb_000997_030 Hb_000997_030 Hb_029142_010--Hb_000997_030 Hb_005494_020--Hb_000567_010 Hb_003935_030 Hb_003935_030 Hb_005494_020--Hb_003935_030 Hb_002960_160 Hb_002960_160 Hb_005494_020--Hb_002960_160 Hb_003428_070 Hb_003428_070 Hb_005494_020--Hb_003428_070 Hb_000347_130 Hb_000347_130 Hb_005494_020--Hb_000347_130 Hb_002163_010 Hb_002163_010 Hb_005122_080--Hb_002163_010 Hb_001633_040 Hb_001633_040 Hb_005122_080--Hb_001633_040 Hb_010080_060 Hb_010080_060 Hb_005122_080--Hb_010080_060 Hb_031042_070 Hb_031042_070 Hb_005122_080--Hb_031042_070 Hb_005122_080--Hb_005494_020 Hb_003124_130 Hb_003124_130 Hb_000567_010--Hb_003124_130 Hb_010193_050 Hb_010193_050 Hb_000567_010--Hb_010193_050 Hb_147737_010 Hb_147737_010 Hb_000567_010--Hb_147737_010 Hb_000768_110 Hb_000768_110 Hb_000567_010--Hb_000768_110 Hb_000331_190 Hb_000331_190 Hb_000567_010--Hb_000331_190 Hb_000107_040--Hb_000997_030 Hb_003623_030 Hb_003623_030 Hb_000107_040--Hb_003623_030 Hb_000107_040--Hb_000023_060 Hb_030565_090 Hb_030565_090 Hb_000107_040--Hb_030565_090 Hb_000264_100 Hb_000264_100 Hb_000107_040--Hb_000264_100 Hb_000023_060--Hb_000997_030 Hb_007849_020 Hb_007849_020 Hb_000023_060--Hb_007849_020 Hb_000227_380 Hb_000227_380 Hb_000023_060--Hb_000227_380 Hb_042487_010 Hb_042487_010 Hb_000023_060--Hb_042487_010 Hb_000997_030--Hb_000264_100 Hb_000997_030--Hb_030565_090 Hb_000813_100 Hb_000813_100 Hb_000997_030--Hb_000813_100 Hb_034243_020 Hb_034243_020 Hb_000997_030--Hb_034243_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.9277 34.4961 9.25463 14.8759 35.4826 56.1156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5947 15.5204 15.6399 34.5175 13.1107

CAGE analysis