Hb_002960_160

Information

Type -
Description -
Location Contig2960: 129449-146821
Sequence    

Annotation

kegg
ID vvi:100243826
description vacuolar protein sorting-associated protein 35B
nr
ID XP_012073763.1
description PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
swissprot
ID F4I0P8
description Vacuolar protein sorting-associated protein 35B OS=Arabidopsis thaliana GN=VPS35B PE=1 SV=1
trembl
ID E6NTZ8
description Vacuolar protein sorting-associated protein 35 OS=Jatropha curcas GN=JHL20J20.15 PE=3 SV=1
Gene Ontology
ID GO:0005622
description vacuolar protein sorting-associated protein 35b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30974: 129556-130190 , PASA_asmbl_30975: 142953-143554 , PASA_asmbl_30976: 144794-146251
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002960_160 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
2 Hb_005494_020 0.0658656385 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
3 Hb_000567_010 0.0658940546 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
4 Hb_063716_080 0.0671896795 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
5 Hb_000796_190 0.0727236291 - - hypothetical protein F383_31148 [Gossypium arboreum]
6 Hb_000743_040 0.0730995484 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
7 Hb_002044_060 0.0745386499 - - elongation factor ts, putative [Ricinus communis]
8 Hb_000567_050 0.0749850327 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
9 Hb_001417_050 0.0752057394 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
10 Hb_005914_060 0.0760656979 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
11 Hb_003124_130 0.0762865722 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
12 Hb_010193_050 0.0781671099 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012180_050 0.0782309645 - - PREDICTED: uncharacterized protein LOC105632355 isoform X3 [Jatropha curcas]
14 Hb_003299_070 0.0801007318 - - AMP deaminase [Theobroma cacao]
15 Hb_003428_070 0.0808053142 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
16 Hb_003935_030 0.082211064 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
17 Hb_009151_020 0.0826731462 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
18 Hb_000160_290 0.0832698938 - - unnamed protein product [Vitis vinifera]
19 Hb_000329_090 0.0837152957 - - arginase, putative [Ricinus communis]
20 Hb_185679_010 0.0840284876 - - serine/threonine-protein kinase rio2, putative [Ricinus communis]

Gene co-expression network

sample Hb_002960_160 Hb_002960_160 Hb_005494_020 Hb_005494_020 Hb_002960_160--Hb_005494_020 Hb_000567_010 Hb_000567_010 Hb_002960_160--Hb_000567_010 Hb_063716_080 Hb_063716_080 Hb_002960_160--Hb_063716_080 Hb_000796_190 Hb_000796_190 Hb_002960_160--Hb_000796_190 Hb_000743_040 Hb_000743_040 Hb_002960_160--Hb_000743_040 Hb_002044_060 Hb_002044_060 Hb_002960_160--Hb_002044_060 Hb_005494_020--Hb_000567_010 Hb_029142_010 Hb_029142_010 Hb_005494_020--Hb_029142_010 Hb_003935_030 Hb_003935_030 Hb_005494_020--Hb_003935_030 Hb_003428_070 Hb_003428_070 Hb_005494_020--Hb_003428_070 Hb_000347_130 Hb_000347_130 Hb_005494_020--Hb_000347_130 Hb_003124_130 Hb_003124_130 Hb_000567_010--Hb_003124_130 Hb_010193_050 Hb_010193_050 Hb_000567_010--Hb_010193_050 Hb_147737_010 Hb_147737_010 Hb_000567_010--Hb_147737_010 Hb_000768_110 Hb_000768_110 Hb_000567_010--Hb_000768_110 Hb_000331_190 Hb_000331_190 Hb_000567_010--Hb_000331_190 Hb_003641_060 Hb_003641_060 Hb_063716_080--Hb_003641_060 Hb_002255_030 Hb_002255_030 Hb_063716_080--Hb_002255_030 Hb_012180_050 Hb_012180_050 Hb_063716_080--Hb_012180_050 Hb_080313_010 Hb_080313_010 Hb_063716_080--Hb_080313_010 Hb_063716_080--Hb_003935_030 Hb_007558_120 Hb_007558_120 Hb_000796_190--Hb_007558_120 Hb_000796_190--Hb_003124_130 Hb_000329_130 Hb_000329_130 Hb_000796_190--Hb_000329_130 Hb_002174_020 Hb_002174_020 Hb_000796_190--Hb_002174_020 Hb_000300_360 Hb_000300_360 Hb_000796_190--Hb_000300_360 Hb_001454_320 Hb_001454_320 Hb_000796_190--Hb_001454_320 Hb_000329_090 Hb_000329_090 Hb_000743_040--Hb_000329_090 Hb_000600_070 Hb_000600_070 Hb_000743_040--Hb_000600_070 Hb_000743_040--Hb_003428_070 Hb_000567_050 Hb_000567_050 Hb_000743_040--Hb_000567_050 Hb_000072_350 Hb_000072_350 Hb_000743_040--Hb_000072_350 Hb_010381_060 Hb_010381_060 Hb_000743_040--Hb_010381_060 Hb_004370_030 Hb_004370_030 Hb_002044_060--Hb_004370_030 Hb_004450_010 Hb_004450_010 Hb_002044_060--Hb_004450_010 Hb_002044_060--Hb_000567_050 Hb_026099_010 Hb_026099_010 Hb_002044_060--Hb_026099_010 Hb_002942_160 Hb_002942_160 Hb_002044_060--Hb_002942_160 Hb_000789_080 Hb_000789_080 Hb_002044_060--Hb_000789_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2409 9.73917 4.29621 6.39524 12.673 16.7801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.09009 6.22346 3.29615 6.72513 5.48612

CAGE analysis