Hb_003124_130

Information

Type -
Description -
Location Contig3124: 56180-64388
Sequence    

Annotation

kegg
ID rcu:RCOM_0886780
description Poly(rC)-binding protein, putative
nr
ID XP_012081372.1
description PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
swissprot
ID P58223
description KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1
trembl
ID A0A067KDQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18761 PE=4 SV=1
Gene Ontology
ID GO:0003723
description kh domain-containing protein at4g18375-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33019: 56410-64195 , PASA_asmbl_33020: 56183-57296
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003124_130 0.0 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
2 Hb_000567_010 0.0480031587 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
3 Hb_000796_190 0.0601665974 - - hypothetical protein F383_31148 [Gossypium arboreum]
4 Hb_147737_010 0.0602987753 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
5 Hb_001454_320 0.0614592512 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
6 Hb_000158_130 0.0621751015 - - PREDICTED: uncharacterized protein LOC105647950 isoform X1 [Jatropha curcas]
7 Hb_000160_290 0.0625433605 - - unnamed protein product [Vitis vinifera]
8 Hb_010193_050 0.0628776668 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000645_120 0.0674211306 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
10 Hb_002174_020 0.0690867496 - - ring finger protein, putative [Ricinus communis]
11 Hb_005494_020 0.0695141557 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
12 Hb_000329_130 0.070137995 - - beta-tubulin cofactor d, putative [Ricinus communis]
13 Hb_006252_020 0.070144152 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
14 Hb_000347_130 0.0715353435 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
15 Hb_002235_160 0.0719012539 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
16 Hb_015099_010 0.0721139201 - - PREDICTED: probable glucan 1,3-alpha-glucosidase [Jatropha curcas]
17 Hb_000510_310 0.0747440434 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
18 Hb_001473_090 0.0750910284 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
19 Hb_000209_070 0.0762548434 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
20 Hb_002960_160 0.0762865722 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003124_130 Hb_003124_130 Hb_000567_010 Hb_000567_010 Hb_003124_130--Hb_000567_010 Hb_000796_190 Hb_000796_190 Hb_003124_130--Hb_000796_190 Hb_147737_010 Hb_147737_010 Hb_003124_130--Hb_147737_010 Hb_001454_320 Hb_001454_320 Hb_003124_130--Hb_001454_320 Hb_000158_130 Hb_000158_130 Hb_003124_130--Hb_000158_130 Hb_000160_290 Hb_000160_290 Hb_003124_130--Hb_000160_290 Hb_010193_050 Hb_010193_050 Hb_000567_010--Hb_010193_050 Hb_005494_020 Hb_005494_020 Hb_000567_010--Hb_005494_020 Hb_000567_010--Hb_147737_010 Hb_000768_110 Hb_000768_110 Hb_000567_010--Hb_000768_110 Hb_000331_190 Hb_000331_190 Hb_000567_010--Hb_000331_190 Hb_007558_120 Hb_007558_120 Hb_000796_190--Hb_007558_120 Hb_000329_130 Hb_000329_130 Hb_000796_190--Hb_000329_130 Hb_002174_020 Hb_002174_020 Hb_000796_190--Hb_002174_020 Hb_000300_360 Hb_000300_360 Hb_000796_190--Hb_000300_360 Hb_000796_190--Hb_001454_320 Hb_147737_010--Hb_000329_130 Hb_015026_050 Hb_015026_050 Hb_147737_010--Hb_015026_050 Hb_000343_210 Hb_000343_210 Hb_147737_010--Hb_000343_210 Hb_000531_090 Hb_000531_090 Hb_147737_010--Hb_000531_090 Hb_001492_010 Hb_001492_010 Hb_001454_320--Hb_001492_010 Hb_000648_100 Hb_000648_100 Hb_001454_320--Hb_000648_100 Hb_001454_320--Hb_000160_290 Hb_001454_320--Hb_007558_120 Hb_000136_090 Hb_000136_090 Hb_000158_130--Hb_000136_090 Hb_000375_130 Hb_000375_130 Hb_000158_130--Hb_000375_130 Hb_012180_050 Hb_012180_050 Hb_000158_130--Hb_012180_050 Hb_000098_130 Hb_000098_130 Hb_000158_130--Hb_000098_130 Hb_000158_130--Hb_001454_320 Hb_000160_290--Hb_002174_020 Hb_000922_370 Hb_000922_370 Hb_000160_290--Hb_000922_370 Hb_001417_050 Hb_001417_050 Hb_000160_290--Hb_001417_050 Hb_002235_160 Hb_002235_160 Hb_000160_290--Hb_002235_160 Hb_003044_020 Hb_003044_020 Hb_000160_290--Hb_003044_020 Hb_001493_040 Hb_001493_040 Hb_000160_290--Hb_001493_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.5382 31.2448 14.9947 18.566 36.0725 49.6253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6361 12.0287 14.9129 20.6798 12.8953

CAGE analysis