Hb_000098_130

Information

Type -
Description -
Location Contig98: 139884-143950
Sequence    

Annotation

kegg
ID rcu:RCOM_0321490
description Serine/threonine-protein kinase ASK1, putative (EC:2.7.11.1)
nr
ID XP_012071302.1
description PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
swissprot
ID P43291
description Serine/threonine-protein kinase SRK2A OS=Arabidopsis thaliana GN=SRK2A PE=1 SV=1
trembl
ID A0A067KRJ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04988 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase srk2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64340: 140099-144381
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000098_130 0.0 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
2 Hb_000261_290 0.0443406875 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
3 Hb_004899_070 0.0449218771 - - PREDICTED: RRP12-like protein [Jatropha curcas]
4 Hb_000120_620 0.0581338839 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
5 Hb_003097_180 0.0593126295 - - PREDICTED: crossover junction endonuclease MUS81 [Jatropha curcas]
6 Hb_000363_130 0.0745344251 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
7 Hb_000300_360 0.0746512113 - - PREDICTED: exosome component 10 [Jatropha curcas]
8 Hb_001946_300 0.075146242 - - PREDICTED: F-box protein At-B [Jatropha curcas]
9 Hb_140049_020 0.0752878841 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
10 Hb_004970_160 0.0761119724 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
11 Hb_000136_090 0.0763837975 - - programmed cell death protein, putative [Ricinus communis]
12 Hb_000313_340 0.0771840534 - - DNA repair protein xp-E, putative [Ricinus communis]
13 Hb_000120_610 0.0796425725 - - mitotic control protein dis3, putative [Ricinus communis]
14 Hb_006588_050 0.0807541366 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
15 Hb_000158_130 0.0819291252 - - PREDICTED: uncharacterized protein LOC105647950 isoform X1 [Jatropha curcas]
16 Hb_000594_020 0.0830978841 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
17 Hb_110482_010 0.0834479135 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
18 Hb_000504_160 0.0855782957 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
19 Hb_012180_050 0.0860891459 - - PREDICTED: uncharacterized protein LOC105632355 isoform X3 [Jatropha curcas]
20 Hb_001028_070 0.0874213509 - - PREDICTED: WD repeat-containing protein 75 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000098_130 Hb_000098_130 Hb_000261_290 Hb_000261_290 Hb_000098_130--Hb_000261_290 Hb_004899_070 Hb_004899_070 Hb_000098_130--Hb_004899_070 Hb_000120_620 Hb_000120_620 Hb_000098_130--Hb_000120_620 Hb_003097_180 Hb_003097_180 Hb_000098_130--Hb_003097_180 Hb_000363_130 Hb_000363_130 Hb_000098_130--Hb_000363_130 Hb_000300_360 Hb_000300_360 Hb_000098_130--Hb_000300_360 Hb_000261_290--Hb_004899_070 Hb_000261_290--Hb_000120_620 Hb_000313_340 Hb_000313_340 Hb_000261_290--Hb_000313_340 Hb_000261_290--Hb_003097_180 Hb_006588_050 Hb_006588_050 Hb_000261_290--Hb_006588_050 Hb_004899_070--Hb_000120_620 Hb_004970_160 Hb_004970_160 Hb_004899_070--Hb_004970_160 Hb_000640_200 Hb_000640_200 Hb_004899_070--Hb_000640_200 Hb_000813_100 Hb_000813_100 Hb_004899_070--Hb_000813_100 Hb_000120_620--Hb_004970_160 Hb_000120_620--Hb_003097_180 Hb_001178_150 Hb_001178_150 Hb_000120_620--Hb_001178_150 Hb_003097_180--Hb_004899_070 Hb_003097_180--Hb_006588_050 Hb_003097_180--Hb_001178_150 Hb_001946_300 Hb_001946_300 Hb_000363_130--Hb_001946_300 Hb_140049_020 Hb_140049_020 Hb_000363_130--Hb_140049_020 Hb_000363_130--Hb_000313_340 Hb_000865_080 Hb_000865_080 Hb_000363_130--Hb_000865_080 Hb_030565_090 Hb_030565_090 Hb_000363_130--Hb_030565_090 Hb_000136_090 Hb_000136_090 Hb_000363_130--Hb_000136_090 Hb_007982_070 Hb_007982_070 Hb_000300_360--Hb_007982_070 Hb_001633_040 Hb_001633_040 Hb_000300_360--Hb_001633_040 Hb_000796_190 Hb_000796_190 Hb_000300_360--Hb_000796_190 Hb_000300_360--Hb_140049_020 Hb_080147_040 Hb_080147_040 Hb_000300_360--Hb_080147_040 Hb_007558_120 Hb_007558_120 Hb_000300_360--Hb_007558_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
115.388 112.706 49.0974 35.24 117.358 138.617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.3746 30.0711 24.5981 62.7365 25.8861

CAGE analysis