Hb_000813_100

Information

Type -
Description -
Location Contig813: 78074-113402
Sequence    

Annotation

kegg
ID rcu:RCOM_0824380
description hypothetical protein
nr
ID XP_012069143.1
description PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
swissprot
ID Q9C7Z9
description Serine carboxypeptidase-like 18 OS=Arabidopsis thaliana GN=SCPL18 PE=2 SV=2
trembl
ID A0A067L0Z5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24907 PE=4 SV=1
Gene Ontology
ID GO:0003677
description methyl-cpg-binding domain isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59294: 82165-82865 , PASA_asmbl_59296: 90624-91549 , PASA_asmbl_59297: 98777-100090 , PASA_asmbl_59298: 100193-100875 , PASA_asmbl_59299: 102933-108405 , PASA_asmbl_59300: 101031-108247 , PASA_asmbl_59301: 101546-103179
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000813_100 0.0 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
2 Hb_000594_020 0.0579803179 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
3 Hb_000997_030 0.0617956016 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
4 Hb_004899_070 0.0643366814 - - PREDICTED: RRP12-like protein [Jatropha curcas]
5 Hb_147737_010 0.0652627453 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
6 Hb_000002_440 0.0720416733 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
7 Hb_001946_300 0.0752156367 - - PREDICTED: F-box protein At-B [Jatropha curcas]
8 Hb_030565_090 0.0764363866 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
9 Hb_000264_100 0.0764546572 - - conserved hypothetical protein [Ricinus communis]
10 Hb_025477_060 0.076947039 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
11 Hb_000475_020 0.0770863193 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
12 Hb_000120_610 0.0775098996 - - mitotic control protein dis3, putative [Ricinus communis]
13 Hb_056196_050 0.0778734125 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
14 Hb_001080_270 0.078577775 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
15 Hb_033883_060 0.078958714 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
16 Hb_007904_180 0.0807461998 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
17 Hb_000363_130 0.0810447849 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
18 Hb_000640_200 0.0811295833 - - hypothetical protein RCOM_1346600 [Ricinus communis]
19 Hb_000227_380 0.0812271801 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
20 Hb_004970_160 0.0812290931 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000813_100 Hb_000813_100 Hb_000594_020 Hb_000594_020 Hb_000813_100--Hb_000594_020 Hb_000997_030 Hb_000997_030 Hb_000813_100--Hb_000997_030 Hb_004899_070 Hb_004899_070 Hb_000813_100--Hb_004899_070 Hb_147737_010 Hb_147737_010 Hb_000813_100--Hb_147737_010 Hb_000002_440 Hb_000002_440 Hb_000813_100--Hb_000002_440 Hb_001946_300 Hb_001946_300 Hb_000813_100--Hb_001946_300 Hb_000120_610 Hb_000120_610 Hb_000594_020--Hb_000120_610 Hb_002659_060 Hb_002659_060 Hb_000594_020--Hb_002659_060 Hb_000594_020--Hb_004899_070 Hb_002411_120 Hb_002411_120 Hb_000594_020--Hb_002411_120 Hb_004970_160 Hb_004970_160 Hb_000594_020--Hb_004970_160 Hb_000264_100 Hb_000264_100 Hb_000997_030--Hb_000264_100 Hb_030565_090 Hb_030565_090 Hb_000997_030--Hb_030565_090 Hb_000107_040 Hb_000107_040 Hb_000997_030--Hb_000107_040 Hb_000023_060 Hb_000023_060 Hb_000997_030--Hb_000023_060 Hb_034243_020 Hb_034243_020 Hb_000997_030--Hb_034243_020 Hb_000098_130 Hb_000098_130 Hb_004899_070--Hb_000098_130 Hb_000261_290 Hb_000261_290 Hb_004899_070--Hb_000261_290 Hb_000120_620 Hb_000120_620 Hb_004899_070--Hb_000120_620 Hb_004899_070--Hb_004970_160 Hb_000640_200 Hb_000640_200 Hb_004899_070--Hb_000640_200 Hb_000329_130 Hb_000329_130 Hb_147737_010--Hb_000329_130 Hb_015026_050 Hb_015026_050 Hb_147737_010--Hb_015026_050 Hb_000343_210 Hb_000343_210 Hb_147737_010--Hb_000343_210 Hb_000567_010 Hb_000567_010 Hb_147737_010--Hb_000567_010 Hb_003124_130 Hb_003124_130 Hb_147737_010--Hb_003124_130 Hb_000531_090 Hb_000531_090 Hb_147737_010--Hb_000531_090 Hb_025477_060 Hb_025477_060 Hb_000002_440--Hb_025477_060 Hb_000227_380 Hb_000227_380 Hb_000002_440--Hb_000227_380 Hb_000096_180 Hb_000096_180 Hb_000002_440--Hb_000096_180 Hb_000002_440--Hb_000594_020 Hb_002883_010 Hb_002883_010 Hb_000002_440--Hb_002883_010 Hb_000363_130 Hb_000363_130 Hb_001946_300--Hb_000363_130 Hb_000313_340 Hb_000313_340 Hb_001946_300--Hb_000313_340 Hb_140049_020 Hb_140049_020 Hb_001946_300--Hb_140049_020 Hb_001946_300--Hb_147737_010 Hb_032202_240 Hb_032202_240 Hb_001946_300--Hb_032202_240 Hb_000504_160 Hb_000504_160 Hb_001946_300--Hb_000504_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.7443 18.4744 4.64689 6.20423 19.5804 21.7617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.85372 3.54129 6.19759 8.31677 6.57385

CAGE analysis