Hb_000023_060

Information

Type -
Description -
Location Contig23: 136087-145364
Sequence    

Annotation

kegg
ID rcu:RCOM_1593980
description hypothetical protein
nr
ID XP_012071826.1
description PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
swissprot
ID Q6Y7W8
description PERQ amino acid-rich with GYF domain-containing protein 2 OS=Mus musculus GN=Gigyf2 PE=1 SV=2
trembl
ID B9R7S6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1593980 PE=4 SV=1
Gene Ontology
ID GO:0005515
description perq amino acid-rich with gyf domain-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23932: 136095-140501 , PASA_asmbl_23933: 140503-145278
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_060 0.0 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
2 Hb_000997_030 0.0686984806 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
3 Hb_029142_010 0.0717832648 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
4 Hb_007849_020 0.0743128915 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
5 Hb_000107_040 0.0761467282 - - nuclear pore complex protein nup153, putative [Ricinus communis]
6 Hb_000227_380 0.0776940196 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
7 Hb_042487_010 0.0810091102 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
8 Hb_000236_080 0.0822828205 - - PREDICTED: small subunit processome component 20 homolog [Jatropha curcas]
9 Hb_141547_010 0.0832370986 - - PREDICTED: ARF guanine-nucleotide exchange factor GNOM [Jatropha curcas]
10 Hb_006816_300 0.0853960738 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
11 Hb_006816_410 0.0854572263 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
12 Hb_002471_210 0.085662854 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
13 Hb_000264_100 0.0858139018 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000342_090 0.0902784732 - - PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Jatropha curcas]
15 Hb_001900_110 0.0915789843 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
16 Hb_003623_030 0.0916695785 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]
17 Hb_007904_180 0.0920043448 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
18 Hb_004970_160 0.0928115092 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
19 Hb_002291_070 0.0935591965 - - PREDICTED: dentin sialophosphoprotein [Prunus mume]
20 Hb_000589_040 0.0947707554 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]

Gene co-expression network

sample Hb_000023_060 Hb_000023_060 Hb_000997_030 Hb_000997_030 Hb_000023_060--Hb_000997_030 Hb_029142_010 Hb_029142_010 Hb_000023_060--Hb_029142_010 Hb_007849_020 Hb_007849_020 Hb_000023_060--Hb_007849_020 Hb_000107_040 Hb_000107_040 Hb_000023_060--Hb_000107_040 Hb_000227_380 Hb_000227_380 Hb_000023_060--Hb_000227_380 Hb_042487_010 Hb_042487_010 Hb_000023_060--Hb_042487_010 Hb_000264_100 Hb_000264_100 Hb_000997_030--Hb_000264_100 Hb_030565_090 Hb_030565_090 Hb_000997_030--Hb_030565_090 Hb_000813_100 Hb_000813_100 Hb_000997_030--Hb_000813_100 Hb_000997_030--Hb_000107_040 Hb_034243_020 Hb_034243_020 Hb_000997_030--Hb_034243_020 Hb_005494_020 Hb_005494_020 Hb_029142_010--Hb_005494_020 Hb_005122_080 Hb_005122_080 Hb_029142_010--Hb_005122_080 Hb_000567_010 Hb_000567_010 Hb_029142_010--Hb_000567_010 Hb_029142_010--Hb_000107_040 Hb_029142_010--Hb_000997_030 Hb_006816_300 Hb_006816_300 Hb_007849_020--Hb_006816_300 Hb_002471_210 Hb_002471_210 Hb_007849_020--Hb_002471_210 Hb_000250_070 Hb_000250_070 Hb_007849_020--Hb_000250_070 Hb_007849_020--Hb_000227_380 Hb_002105_080 Hb_002105_080 Hb_007849_020--Hb_002105_080 Hb_002291_070 Hb_002291_070 Hb_007849_020--Hb_002291_070 Hb_003623_030 Hb_003623_030 Hb_000107_040--Hb_003623_030 Hb_000107_040--Hb_030565_090 Hb_000107_040--Hb_000264_100 Hb_003866_020 Hb_003866_020 Hb_000227_380--Hb_003866_020 Hb_175338_020 Hb_175338_020 Hb_000227_380--Hb_175338_020 Hb_000239_070 Hb_000239_070 Hb_000227_380--Hb_000239_070 Hb_000002_440 Hb_000002_440 Hb_000227_380--Hb_000002_440 Hb_001080_270 Hb_001080_270 Hb_000227_380--Hb_001080_270 Hb_000699_250 Hb_000699_250 Hb_042487_010--Hb_000699_250 Hb_042487_010--Hb_007849_020 Hb_042487_010--Hb_029142_010 Hb_025012_010 Hb_025012_010 Hb_042487_010--Hb_025012_010 Hb_042487_010--Hb_006816_300 Hb_000340_160 Hb_000340_160 Hb_042487_010--Hb_000340_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.3555 51.0449 9.06992 15.6424 56.3203 78.5633
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.3567 12.24 20.5137 45.8251 21.6551

CAGE analysis