Hb_000340_160

Information

Type -
Description -
Location Contig340: 168754-173124
Sequence    

Annotation

kegg
ID rcu:RCOM_0648170
description elongation factor tu, putative (EC:2.7.7.4)
nr
ID XP_012092299.1
description PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
swissprot
ID Q9ZT91
description Elongation factor Tu, mitochondrial OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1
trembl
ID A0A067JNB1
description Elongation factor Tu OS=Jatropha curcas GN=JCGZ_21976 PE=3 SV=1
Gene Ontology
ID GO:0005618
description elongation factor mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35535: 168757-173129 , PASA_asmbl_35536: 168757-173129
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_160 0.0 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
2 Hb_000239_070 0.0524019141 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
3 Hb_000699_250 0.0591817124 - - Poly(rC)-binding protein, putative [Ricinus communis]
4 Hb_000331_190 0.0613429793 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
5 Hb_024990_010 0.070401864 - - PREDICTED: la protein 1 [Jatropha curcas]
6 Hb_000567_010 0.0738700125 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
7 Hb_125092_020 0.0777288919 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
8 Hb_042487_010 0.0801038404 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
9 Hb_003866_020 0.0812641 - - conserved hypothetical protein [Ricinus communis]
10 Hb_175338_020 0.0813368461 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
11 Hb_000227_380 0.0830318577 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
12 Hb_004970_150 0.0830840333 - - PREDICTED: uncharacterized protein LOC105633636 [Jatropha curcas]
13 Hb_007849_020 0.0838211012 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
14 Hb_001301_210 0.0848783845 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
15 Hb_029142_010 0.0864154242 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
16 Hb_081879_030 0.0879269308 - - PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Jatropha curcas]
17 Hb_002652_040 0.0883623123 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
18 Hb_000120_510 0.089134197 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
19 Hb_000531_090 0.0891685092 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
20 Hb_006816_300 0.0902285205 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]

Gene co-expression network

sample Hb_000340_160 Hb_000340_160 Hb_000239_070 Hb_000239_070 Hb_000340_160--Hb_000239_070 Hb_000699_250 Hb_000699_250 Hb_000340_160--Hb_000699_250 Hb_000331_190 Hb_000331_190 Hb_000340_160--Hb_000331_190 Hb_024990_010 Hb_024990_010 Hb_000340_160--Hb_024990_010 Hb_000567_010 Hb_000567_010 Hb_000340_160--Hb_000567_010 Hb_125092_020 Hb_125092_020 Hb_000340_160--Hb_125092_020 Hb_000227_380 Hb_000227_380 Hb_000239_070--Hb_000227_380 Hb_002883_010 Hb_002883_010 Hb_000239_070--Hb_002883_010 Hb_000239_070--Hb_000331_190 Hb_175338_020 Hb_175338_020 Hb_000239_070--Hb_175338_020 Hb_002235_320 Hb_002235_320 Hb_000239_070--Hb_002235_320 Hb_042487_010 Hb_042487_010 Hb_000699_250--Hb_042487_010 Hb_008714_020 Hb_008714_020 Hb_000699_250--Hb_008714_020 Hb_000046_450 Hb_000046_450 Hb_000699_250--Hb_000046_450 Hb_004970_150 Hb_004970_150 Hb_000699_250--Hb_004970_150 Hb_004037_030 Hb_004037_030 Hb_000699_250--Hb_004037_030 Hb_002652_040 Hb_002652_040 Hb_000331_190--Hb_002652_040 Hb_000331_190--Hb_125092_020 Hb_000331_190--Hb_024990_010 Hb_000035_040 Hb_000035_040 Hb_000331_190--Hb_000035_040 Hb_000331_190--Hb_000567_010 Hb_000531_090 Hb_000531_090 Hb_024990_010--Hb_000531_090 Hb_024990_010--Hb_125092_020 Hb_001221_040 Hb_001221_040 Hb_024990_010--Hb_001221_040 Hb_007668_040 Hb_007668_040 Hb_024990_010--Hb_007668_040 Hb_003124_130 Hb_003124_130 Hb_000567_010--Hb_003124_130 Hb_010193_050 Hb_010193_050 Hb_000567_010--Hb_010193_050 Hb_005494_020 Hb_005494_020 Hb_000567_010--Hb_005494_020 Hb_147737_010 Hb_147737_010 Hb_000567_010--Hb_147737_010 Hb_000768_110 Hb_000768_110 Hb_000567_010--Hb_000768_110 Hb_125092_020--Hb_000531_090 Hb_125092_020--Hb_002652_040 Hb_125092_020--Hb_000035_040 Hb_125092_020--Hb_000567_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.7942 25.2119 10.6243 10.0022 38.4345 58.3136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2501 14.2735 13.4511 21.4457 7.91452

CAGE analysis