Hb_004970_150

Information

Type -
Description -
Location Contig4970: 118035-124892
Sequence    

Annotation

kegg
ID pop:POPTR_0014s02790g
description hypothetical protein
nr
ID XP_012071650.1
description PREDICTED: uncharacterized protein LOC105633636 [Jatropha curcas]
swissprot
ID P85107
description Trimethylguanosine synthase OS=Rattus norvegicus GN=Tgs1 PE=1 SV=1
trembl
ID A0A067KTP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04253 PE=4 SV=1
Gene Ontology
ID GO:0005515
description s-adenosyl-l-methionine-dependent methyltransferases superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45554: 118038-119331 , PASA_asmbl_45555: 119365-122605
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004970_150 0.0 - - PREDICTED: uncharacterized protein LOC105633636 [Jatropha curcas]
2 Hb_000865_080 0.0710149891 - - arsenite-resistance protein, putative [Ricinus communis]
3 Hb_000699_250 0.0729811143 - - Poly(rC)-binding protein, putative [Ricinus communis]
4 Hb_000567_010 0.0766017748 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
5 Hb_003428_070 0.0805667661 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
6 Hb_003935_030 0.0806622037 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
7 Hb_005914_060 0.0820798954 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
8 Hb_000340_160 0.0830840333 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
9 Hb_000025_360 0.0841061868 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
10 Hb_000239_070 0.0842974583 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
11 Hb_175338_020 0.0857569877 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
12 Hb_008714_020 0.0858597126 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
13 Hb_000224_060 0.0861698808 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
14 Hb_004162_280 0.0869173364 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
15 Hb_000768_110 0.0871176541 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
16 Hb_005494_020 0.0878245288 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
17 Hb_010193_050 0.0881659396 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001157_180 0.0893079883 - - protein binding protein, putative [Ricinus communis]
19 Hb_004734_060 0.0894927213 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
20 Hb_001584_170 0.0899979876 - - neutral/alkaline invertase [Manihot esculenta]

Gene co-expression network

sample Hb_004970_150 Hb_004970_150 Hb_000865_080 Hb_000865_080 Hb_004970_150--Hb_000865_080 Hb_000699_250 Hb_000699_250 Hb_004970_150--Hb_000699_250 Hb_000567_010 Hb_000567_010 Hb_004970_150--Hb_000567_010 Hb_003428_070 Hb_003428_070 Hb_004970_150--Hb_003428_070 Hb_003935_030 Hb_003935_030 Hb_004970_150--Hb_003935_030 Hb_005914_060 Hb_005914_060 Hb_004970_150--Hb_005914_060 Hb_000291_190 Hb_000291_190 Hb_000865_080--Hb_000291_190 Hb_000224_060 Hb_000224_060 Hb_000865_080--Hb_000224_060 Hb_000363_130 Hb_000363_130 Hb_000865_080--Hb_000363_130 Hb_023827_040 Hb_023827_040 Hb_000865_080--Hb_023827_040 Hb_000025_360 Hb_000025_360 Hb_000865_080--Hb_000025_360 Hb_000340_160 Hb_000340_160 Hb_000699_250--Hb_000340_160 Hb_042487_010 Hb_042487_010 Hb_000699_250--Hb_042487_010 Hb_008714_020 Hb_008714_020 Hb_000699_250--Hb_008714_020 Hb_000046_450 Hb_000046_450 Hb_000699_250--Hb_000046_450 Hb_004037_030 Hb_004037_030 Hb_000699_250--Hb_004037_030 Hb_003124_130 Hb_003124_130 Hb_000567_010--Hb_003124_130 Hb_010193_050 Hb_010193_050 Hb_000567_010--Hb_010193_050 Hb_005494_020 Hb_005494_020 Hb_000567_010--Hb_005494_020 Hb_147737_010 Hb_147737_010 Hb_000567_010--Hb_147737_010 Hb_000768_110 Hb_000768_110 Hb_000567_010--Hb_000768_110 Hb_000331_190 Hb_000331_190 Hb_000567_010--Hb_000331_190 Hb_000567_050 Hb_000567_050 Hb_003428_070--Hb_000567_050 Hb_016898_010 Hb_016898_010 Hb_003428_070--Hb_016898_010 Hb_000101_240 Hb_000101_240 Hb_003428_070--Hb_000101_240 Hb_000743_040 Hb_000743_040 Hb_003428_070--Hb_000743_040 Hb_000820_170 Hb_000820_170 Hb_003428_070--Hb_000820_170 Hb_000173_510 Hb_000173_510 Hb_003428_070--Hb_000173_510 Hb_003935_030--Hb_005494_020 Hb_003299_070 Hb_003299_070 Hb_003935_030--Hb_003299_070 Hb_003935_030--Hb_000567_010 Hb_003935_030--Hb_003428_070 Hb_002304_090 Hb_002304_090 Hb_003935_030--Hb_002304_090 Hb_003935_030--Hb_000768_110 Hb_023386_040 Hb_023386_040 Hb_005914_060--Hb_023386_040 Hb_000926_190 Hb_000926_190 Hb_005914_060--Hb_000926_190 Hb_000179_030 Hb_000179_030 Hb_005914_060--Hb_000179_030 Hb_142439_010 Hb_142439_010 Hb_005914_060--Hb_142439_010 Hb_005914_060--Hb_000768_110 Hb_005914_060--Hb_003428_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0338 9.49552 2.93989 3.04757 9.56325 15.598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.32808 5.88071 4.85407 5.17035 3.61805

CAGE analysis