Hb_000046_450

Information

Type -
Description -
Location Contig46: 356351-363032
Sequence    

Annotation

kegg
ID rcu:RCOM_0680250
description receptor serine-threonine protein kinase, putative (EC:2.7.10.2)
nr
ID XP_012069392.1
description PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
swissprot
ID Q9FE20
description Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1
trembl
ID A0A067KYE6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02011 PE=3 SV=1
Gene Ontology
ID GO:0005886
description serine threonine-protein kinase pbs1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43653: 356401-362923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_450 0.0 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
2 Hb_000699_250 0.072061096 - - Poly(rC)-binding protein, putative [Ricinus communis]
3 Hb_008714_020 0.0729036852 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
4 Hb_006816_300 0.0734886699 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
5 Hb_025477_060 0.0735222297 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
6 Hb_001019_170 0.0773448322 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
7 Hb_007849_020 0.0791995621 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
8 Hb_010180_040 0.0793570395 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]
9 Hb_002716_140 0.0798233209 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
10 Hb_003018_160 0.0804289638 - - PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]
11 Hb_000002_440 0.0807747065 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
12 Hb_031754_010 0.0811020845 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
13 Hb_000096_180 0.0811554196 - - PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like isoform X1 [Jatropha curcas]
14 Hb_001975_020 0.0816309282 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
15 Hb_001871_040 0.0821349951 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
16 Hb_004310_050 0.0824712388 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
17 Hb_000780_220 0.0832964348 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
18 Hb_001040_160 0.0836127915 - - glutaredoxin, grx, putative [Ricinus communis]
19 Hb_147737_010 0.0838519075 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
20 Hb_175338_020 0.0838660532 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]

Gene co-expression network

sample Hb_000046_450 Hb_000046_450 Hb_000699_250 Hb_000699_250 Hb_000046_450--Hb_000699_250 Hb_008714_020 Hb_008714_020 Hb_000046_450--Hb_008714_020 Hb_006816_300 Hb_006816_300 Hb_000046_450--Hb_006816_300 Hb_025477_060 Hb_025477_060 Hb_000046_450--Hb_025477_060 Hb_001019_170 Hb_001019_170 Hb_000046_450--Hb_001019_170 Hb_007849_020 Hb_007849_020 Hb_000046_450--Hb_007849_020 Hb_000340_160 Hb_000340_160 Hb_000699_250--Hb_000340_160 Hb_042487_010 Hb_042487_010 Hb_000699_250--Hb_042487_010 Hb_000699_250--Hb_008714_020 Hb_004970_150 Hb_004970_150 Hb_000699_250--Hb_004970_150 Hb_004037_030 Hb_004037_030 Hb_000699_250--Hb_004037_030 Hb_008714_020--Hb_001019_170 Hb_010180_040 Hb_010180_040 Hb_008714_020--Hb_010180_040 Hb_001040_160 Hb_001040_160 Hb_008714_020--Hb_001040_160 Hb_027028_020 Hb_027028_020 Hb_008714_020--Hb_027028_020 Hb_006816_300--Hb_007849_020 Hb_002105_080 Hb_002105_080 Hb_006816_300--Hb_002105_080 Hb_003018_160 Hb_003018_160 Hb_006816_300--Hb_003018_160 Hb_000227_380 Hb_000227_380 Hb_006816_300--Hb_000227_380 Hb_000250_070 Hb_000250_070 Hb_006816_300--Hb_000250_070 Hb_000002_440 Hb_000002_440 Hb_025477_060--Hb_000002_440 Hb_147737_010 Hb_147737_010 Hb_025477_060--Hb_147737_010 Hb_000096_180 Hb_000096_180 Hb_025477_060--Hb_000096_180 Hb_046615_020 Hb_046615_020 Hb_025477_060--Hb_046615_020 Hb_001975_020 Hb_001975_020 Hb_025477_060--Hb_001975_020 Hb_008695_120 Hb_008695_120 Hb_001019_170--Hb_008695_120 Hb_003581_120 Hb_003581_120 Hb_001019_170--Hb_003581_120 Hb_002400_180 Hb_002400_180 Hb_001019_170--Hb_002400_180 Hb_000076_080 Hb_000076_080 Hb_001019_170--Hb_000076_080 Hb_006913_040 Hb_006913_040 Hb_001019_170--Hb_006913_040 Hb_002471_210 Hb_002471_210 Hb_007849_020--Hb_002471_210 Hb_007849_020--Hb_000250_070 Hb_007849_020--Hb_000227_380 Hb_007849_020--Hb_002105_080 Hb_002291_070 Hb_002291_070 Hb_007849_020--Hb_002291_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.8875 43.0551 9.90357 17.6211 55.2807 78.8268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.5498 14.2013 30.356 21.1838 16.6704

CAGE analysis