Hb_000096_180

Information

Type -
Description -
Location Contig96: 161381-166929
Sequence    

Annotation

kegg
ID rcu:RCOM_0580760
description GTP binding protein, putative
nr
ID XP_012079417.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FJW6
description Pentatricopeptide repeat-containing protein At5g67570, chloroplastic OS=Arabidopsis thaliana GN=DG1 PE=1 SV=2
trembl
ID A0A067K7I2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12543 PE=4 SV=1
Gene Ontology
ID GO:0005622
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63700: 161411-166929
cDNA
(Sanger)
(ID:Location)		 035_I05.ab1: 166264-166929 , 053_M20.ab1: 166259-166929

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000096_180 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like isoform X1 [Jatropha curcas]
2 Hb_027073_060 0.0688223186 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
3 Hb_025477_060 0.0703610982 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
4 Hb_002291_070 0.0708336651 - - PREDICTED: dentin sialophosphoprotein [Prunus mume]
5 Hb_002043_170 0.0711663651 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
6 Hb_001437_100 0.0720120823 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
7 Hb_000002_440 0.0720958721 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
8 Hb_000475_020 0.0772781326 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
9 Hb_004037_030 0.0794903825 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
10 Hb_002883_010 0.0797600943 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
11 Hb_000046_450 0.0811554196 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
12 Hb_007904_180 0.0815462829 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
13 Hb_000250_070 0.0824142828 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
14 Hb_007849_020 0.0869398392 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
15 Hb_001811_120 0.0872238252 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
16 Hb_002471_210 0.0874585745 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
17 Hb_000832_300 0.0880236468 - - -
18 Hb_046615_020 0.0903098692 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
19 Hb_000813_100 0.0912918395 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
20 Hb_000594_020 0.0926794332 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000096_180 Hb_000096_180 Hb_027073_060 Hb_027073_060 Hb_000096_180--Hb_027073_060 Hb_025477_060 Hb_025477_060 Hb_000096_180--Hb_025477_060 Hb_002291_070 Hb_002291_070 Hb_000096_180--Hb_002291_070 Hb_002043_170 Hb_002043_170 Hb_000096_180--Hb_002043_170 Hb_001437_100 Hb_001437_100 Hb_000096_180--Hb_001437_100 Hb_000002_440 Hb_000002_440 Hb_000096_180--Hb_000002_440 Hb_007885_070 Hb_007885_070 Hb_027073_060--Hb_007885_070 Hb_027073_060--Hb_025477_060 Hb_000250_070 Hb_000250_070 Hb_027073_060--Hb_000250_070 Hb_000357_080 Hb_000357_080 Hb_027073_060--Hb_000357_080 Hb_027073_060--Hb_002043_170 Hb_025477_060--Hb_000002_440 Hb_147737_010 Hb_147737_010 Hb_025477_060--Hb_147737_010 Hb_000046_450 Hb_000046_450 Hb_025477_060--Hb_000046_450 Hb_046615_020 Hb_046615_020 Hb_025477_060--Hb_046615_020 Hb_001975_020 Hb_001975_020 Hb_025477_060--Hb_001975_020 Hb_002471_210 Hb_002471_210 Hb_002291_070--Hb_002471_210 Hb_007849_020 Hb_007849_020 Hb_002291_070--Hb_007849_020 Hb_000780_220 Hb_000780_220 Hb_002291_070--Hb_000780_220 Hb_000475_020 Hb_000475_020 Hb_002291_070--Hb_000475_020 Hb_002291_070--Hb_000250_070 Hb_001322_210 Hb_001322_210 Hb_002291_070--Hb_001322_210 Hb_002043_170--Hb_001437_100 Hb_000640_320 Hb_000640_320 Hb_002043_170--Hb_000640_320 Hb_002043_170--Hb_046615_020 Hb_002883_010 Hb_002883_010 Hb_002043_170--Hb_002883_010 Hb_000035_040 Hb_000035_040 Hb_002043_170--Hb_000035_040 Hb_000335_010 Hb_000335_010 Hb_002043_170--Hb_000335_010 Hb_001437_100--Hb_002883_010 Hb_000317_440 Hb_000317_440 Hb_001437_100--Hb_000317_440 Hb_000300_580 Hb_000300_580 Hb_001437_100--Hb_000300_580 Hb_001437_100--Hb_000335_010 Hb_000227_380 Hb_000227_380 Hb_000002_440--Hb_000227_380 Hb_000813_100 Hb_000813_100 Hb_000002_440--Hb_000813_100 Hb_000594_020 Hb_000594_020 Hb_000002_440--Hb_000594_020 Hb_000002_440--Hb_002883_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.2129 41.5361 11.8928 9.33246 58.4547 78.0157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.9378 11.4751 21.515 20.5306 26.0728

CAGE analysis