Hb_000640_320

Information

Type -
Description -
Location Contig640: 303728-307935
Sequence    

Annotation

kegg
ID rcu:RCOM_1346320
description nucleic acid binding protein, putative
nr
ID XP_012082930.1
description PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K7Q2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14056 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc knuckle family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52141: 305374-307022 , PASA_asmbl_52142: 303976-305800 , PASA_asmbl_52143: 303719-305800
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_320 0.0 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
2 Hb_002043_170 0.0559485088 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
3 Hb_108216_040 0.0595973294 - - PREDICTED: protein arginine N-methyltransferase 2 [Jatropha curcas]
4 Hb_008143_030 0.0654175317 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
5 Hb_000714_050 0.0661686503 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
6 Hb_002400_180 0.0667238011 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000343_210 0.0691492024 - - ran-binding protein, putative [Ricinus communis]
8 Hb_000035_040 0.0694679953 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
9 Hb_001235_200 0.0695389408 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003581_120 0.0707909721 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
11 Hb_000100_070 0.0728397576 - - PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Jatropha curcas]
12 Hb_004678_060 0.0741008733 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
13 Hb_001437_100 0.0759161553 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
14 Hb_073171_080 0.0770256559 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
15 Hb_003006_060 0.0776152988 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
16 Hb_000104_080 0.0782117921 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
17 Hb_000335_010 0.078402397 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_009265_080 0.0801885295 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
19 Hb_000531_090 0.0815182724 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
20 Hb_000789_080 0.0818949508 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000640_320 Hb_000640_320 Hb_002043_170 Hb_002043_170 Hb_000640_320--Hb_002043_170 Hb_108216_040 Hb_108216_040 Hb_000640_320--Hb_108216_040 Hb_008143_030 Hb_008143_030 Hb_000640_320--Hb_008143_030 Hb_000714_050 Hb_000714_050 Hb_000640_320--Hb_000714_050 Hb_002400_180 Hb_002400_180 Hb_000640_320--Hb_002400_180 Hb_000343_210 Hb_000343_210 Hb_000640_320--Hb_000343_210 Hb_001437_100 Hb_001437_100 Hb_002043_170--Hb_001437_100 Hb_046615_020 Hb_046615_020 Hb_002043_170--Hb_046615_020 Hb_002883_010 Hb_002883_010 Hb_002043_170--Hb_002883_010 Hb_000035_040 Hb_000035_040 Hb_002043_170--Hb_000035_040 Hb_000335_010 Hb_000335_010 Hb_002043_170--Hb_000335_010 Hb_000100_070 Hb_000100_070 Hb_108216_040--Hb_000100_070 Hb_108216_040--Hb_008143_030 Hb_000207_310 Hb_000207_310 Hb_108216_040--Hb_000207_310 Hb_000116_180 Hb_000116_180 Hb_108216_040--Hb_000116_180 Hb_108216_040--Hb_002400_180 Hb_001584_290 Hb_001584_290 Hb_008143_030--Hb_001584_290 Hb_008143_030--Hb_000035_040 Hb_000104_080 Hb_000104_080 Hb_008143_030--Hb_000104_080 Hb_002652_040 Hb_002652_040 Hb_008143_030--Hb_002652_040 Hb_010381_060 Hb_010381_060 Hb_000714_050--Hb_010381_060 Hb_001235_200 Hb_001235_200 Hb_000714_050--Hb_001235_200 Hb_000320_200 Hb_000320_200 Hb_000714_050--Hb_000320_200 Hb_005892_030 Hb_005892_030 Hb_000714_050--Hb_005892_030 Hb_000329_090 Hb_000329_090 Hb_000714_050--Hb_000329_090 Hb_000329_130 Hb_000329_130 Hb_000714_050--Hb_000329_130 Hb_003581_120 Hb_003581_120 Hb_002400_180--Hb_003581_120 Hb_000684_420 Hb_000684_420 Hb_002400_180--Hb_000684_420 Hb_004678_060 Hb_004678_060 Hb_002400_180--Hb_004678_060 Hb_000803_300 Hb_000803_300 Hb_002400_180--Hb_000803_300 Hb_002097_090 Hb_002097_090 Hb_002400_180--Hb_002097_090 Hb_000034_050 Hb_000034_050 Hb_002400_180--Hb_000034_050 Hb_147737_010 Hb_147737_010 Hb_000343_210--Hb_147737_010 Hb_002675_040 Hb_002675_040 Hb_000343_210--Hb_002675_040 Hb_000343_210--Hb_000035_040 Hb_000331_190 Hb_000331_190 Hb_000343_210--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_000343_210--Hb_000531_090 Hb_003020_110 Hb_003020_110 Hb_000343_210--Hb_003020_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.3067 21.4211 13.435 10.5844 45.0598 46.1407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.3717 15.4798 13.7864 14.75 18.9274

CAGE analysis