Hb_000684_420

Information

Type transcription factor
Description TF Family: C3H
Location Contig684: 410181-414210
Sequence    

Annotation

kegg
ID rcu:RCOM_0819850
description zinc finger protein, putative
nr
ID XP_002525195.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q0JHZ2
description Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0834700 PE=2 SV=2
trembl
ID B9SGS6
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0819850 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54026: 410193-414089
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_420 0.0 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
2 Hb_000076_080 0.0454138798 - - PREDICTED: protein MOS2 [Jatropha curcas]
3 Hb_002097_090 0.0519451361 - - Splicing factor 3A subunit, putative [Ricinus communis]
4 Hb_000186_280 0.052321993 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
5 Hb_002400_180 0.0532740582 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004724_360 0.0595088961 - - OTU-like cysteine protease family protein [Populus trichocarpa]
7 Hb_073171_080 0.0597175952 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
8 Hb_001829_010 0.0599582928 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
9 Hb_012305_070 0.063260998 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003581_120 0.0678382426 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
11 Hb_000001_180 0.0698469843 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
12 Hb_004044_020 0.0705495378 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
13 Hb_001504_160 0.0721398724 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
14 Hb_000645_150 0.0736298132 - - zinc finger protein, putative [Ricinus communis]
15 Hb_005237_060 0.0736718949 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
16 Hb_001616_090 0.0744186682 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
17 Hb_003384_030 0.0748798821 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
18 Hb_001019_170 0.0783300127 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
19 Hb_001437_100 0.0784526175 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
20 Hb_001969_040 0.0791964028 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_000684_420 Hb_000684_420 Hb_000076_080 Hb_000076_080 Hb_000684_420--Hb_000076_080 Hb_002097_090 Hb_002097_090 Hb_000684_420--Hb_002097_090 Hb_000186_280 Hb_000186_280 Hb_000684_420--Hb_000186_280 Hb_002400_180 Hb_002400_180 Hb_000684_420--Hb_002400_180 Hb_004724_360 Hb_004724_360 Hb_000684_420--Hb_004724_360 Hb_073171_080 Hb_073171_080 Hb_000684_420--Hb_073171_080 Hb_001504_160 Hb_001504_160 Hb_000076_080--Hb_001504_160 Hb_000076_080--Hb_004724_360 Hb_000076_080--Hb_002097_090 Hb_000076_080--Hb_002400_180 Hb_000076_080--Hb_000186_280 Hb_000645_150 Hb_000645_150 Hb_002097_090--Hb_000645_150 Hb_004934_090 Hb_004934_090 Hb_002097_090--Hb_004934_090 Hb_009620_040 Hb_009620_040 Hb_002097_090--Hb_009620_040 Hb_000803_300 Hb_000803_300 Hb_002097_090--Hb_000803_300 Hb_001969_040 Hb_001969_040 Hb_000186_280--Hb_001969_040 Hb_000186_280--Hb_002400_180 Hb_000186_280--Hb_000645_150 Hb_012305_070 Hb_012305_070 Hb_000186_280--Hb_012305_070 Hb_003581_120 Hb_003581_120 Hb_002400_180--Hb_003581_120 Hb_004678_060 Hb_004678_060 Hb_002400_180--Hb_004678_060 Hb_002400_180--Hb_000803_300 Hb_002400_180--Hb_002097_090 Hb_000034_050 Hb_000034_050 Hb_002400_180--Hb_000034_050 Hb_000327_310 Hb_000327_310 Hb_004724_360--Hb_000327_310 Hb_004724_360--Hb_001504_160 Hb_000001_180 Hb_000001_180 Hb_004724_360--Hb_000001_180 Hb_005295_040 Hb_005295_040 Hb_004724_360--Hb_005295_040 Hb_073171_080--Hb_004724_360 Hb_073171_080--Hb_000327_310 Hb_000236_280 Hb_000236_280 Hb_073171_080--Hb_000236_280 Hb_001396_290 Hb_001396_290 Hb_073171_080--Hb_001396_290 Hb_073171_080--Hb_002400_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.2131 16.909 7.72223 7.19037 37.0906 46.0685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.1765 17.5726 14.5324 9.73847 8.61185

CAGE analysis