Hb_001504_160

Information

Type -
Description -
Location Contig1504: 151819-158992
Sequence    

Annotation

kegg
ID rcu:RCOM_0471030
description nucleoporin, putative
nr
ID XP_012067537.1
description PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
swissprot
ID Q8LLD0
description Nuclear pore complex protein NUP96 OS=Arabidopsis thaliana GN=NUP96 PE=1 SV=1
trembl
ID A0A067L0P2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27015 PE=4 SV=1
Gene Ontology
ID GO:0005643
description nuclear pore complex protein nup96 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12655: 151832-157962
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_160 0.0 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
2 Hb_000076_080 0.0411213723 - - PREDICTED: protein MOS2 [Jatropha curcas]
3 Hb_012654_010 0.0515013977 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
4 Hb_000230_330 0.056476673 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
5 Hb_004724_360 0.0579957918 - - OTU-like cysteine protease family protein [Populus trichocarpa]
6 Hb_000107_100 0.0595839709 - - hypothetical protein JCGZ_16208 [Jatropha curcas]
7 Hb_003384_030 0.0624824734 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
8 Hb_000001_180 0.0676814756 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
9 Hb_000139_250 0.0684496205 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
10 Hb_001366_040 0.0708253363 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
11 Hb_000684_420 0.0721398724 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
12 Hb_000398_190 0.0733675128 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
13 Hb_000462_150 0.0737119602 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
14 Hb_175338_020 0.073963396 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
15 Hb_002007_250 0.0751936096 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001019_170 0.075339014 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
17 Hb_007407_040 0.0769902086 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_009620_040 0.0770040075 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
19 Hb_002097_090 0.0770941765 - - Splicing factor 3A subunit, putative [Ricinus communis]
20 Hb_000977_180 0.0781394732 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001504_160 Hb_001504_160 Hb_000076_080 Hb_000076_080 Hb_001504_160--Hb_000076_080 Hb_012654_010 Hb_012654_010 Hb_001504_160--Hb_012654_010 Hb_000230_330 Hb_000230_330 Hb_001504_160--Hb_000230_330 Hb_004724_360 Hb_004724_360 Hb_001504_160--Hb_004724_360 Hb_000107_100 Hb_000107_100 Hb_001504_160--Hb_000107_100 Hb_003384_030 Hb_003384_030 Hb_001504_160--Hb_003384_030 Hb_000076_080--Hb_004724_360 Hb_000684_420 Hb_000684_420 Hb_000076_080--Hb_000684_420 Hb_002097_090 Hb_002097_090 Hb_000076_080--Hb_002097_090 Hb_002400_180 Hb_002400_180 Hb_000076_080--Hb_002400_180 Hb_000186_280 Hb_000186_280 Hb_000076_080--Hb_000186_280 Hb_012654_010--Hb_000107_100 Hb_000139_250 Hb_000139_250 Hb_012654_010--Hb_000139_250 Hb_001057_010 Hb_001057_010 Hb_012654_010--Hb_001057_010 Hb_005214_160 Hb_005214_160 Hb_012654_010--Hb_005214_160 Hb_002701_080 Hb_002701_080 Hb_012654_010--Hb_002701_080 Hb_001584_110 Hb_001584_110 Hb_000230_330--Hb_001584_110 Hb_000390_060 Hb_000390_060 Hb_000230_330--Hb_000390_060 Hb_000462_150 Hb_000462_150 Hb_000230_330--Hb_000462_150 Hb_003434_060 Hb_003434_060 Hb_000230_330--Hb_003434_060 Hb_000230_330--Hb_000076_080 Hb_000327_310 Hb_000327_310 Hb_004724_360--Hb_000327_310 Hb_004724_360--Hb_000684_420 Hb_000001_180 Hb_000001_180 Hb_004724_360--Hb_000001_180 Hb_005295_040 Hb_005295_040 Hb_004724_360--Hb_005295_040 Hb_017168_010 Hb_017168_010 Hb_000107_100--Hb_017168_010 Hb_000340_510 Hb_000340_510 Hb_000107_100--Hb_000340_510 Hb_001040_170 Hb_001040_170 Hb_000107_100--Hb_001040_170 Hb_001366_040 Hb_001366_040 Hb_000107_100--Hb_001366_040 Hb_003384_030--Hb_000001_180 Hb_003384_030--Hb_000462_150 Hb_005914_230 Hb_005914_230 Hb_003384_030--Hb_005914_230 Hb_002818_040 Hb_002818_040 Hb_003384_030--Hb_002818_040 Hb_018663_020 Hb_018663_020 Hb_003384_030--Hb_018663_020 Hb_001969_040 Hb_001969_040 Hb_003384_030--Hb_001969_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.6494 9.80796 5.11303 4.74504 27.7661 28.5482
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5203 9.68433 13.5018 9.1641 4.47823

CAGE analysis