Hb_001969_040

Information

Type -
Description -
Location Contig1969: 53998-69981
Sequence    

Annotation

kegg
ID pop:POPTR_0001s17450g
description POPTRDRAFT_829514; transducin family protein
nr
ID XP_012073264.1
description PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
swissprot
ID Q54LT8
description Serine-threonine kinase receptor-associated protein OS=Dictyostelium discoideum GN=strap PE=3 SV=1
trembl
ID A0A067KY06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06206 PE=4 SV=1
Gene Ontology
ID GO:0016301
description serine-threonine kinase receptor-associated

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19732: 54168-60490 , PASA_asmbl_19734: 66238-69939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001969_040 0.0 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
2 Hb_000462_150 0.0505707029 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
3 Hb_000186_280 0.060791611 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
4 Hb_003384_030 0.0619652834 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
5 Hb_018663_020 0.0634639373 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
6 Hb_004324_280 0.0716553371 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
7 Hb_002818_040 0.07190149 - - tRNA synthetase-related family protein [Populus trichocarpa]
8 Hb_001498_030 0.0725024498 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
9 Hb_001226_180 0.0737399435 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
10 Hb_009411_020 0.074563216 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
11 Hb_002400_180 0.0757992163 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004678_060 0.076742546 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
13 Hb_004310_060 0.0769709257 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_005914_230 0.0769717621 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
15 Hb_000001_180 0.0777228265 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
16 Hb_005147_110 0.0786036867 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
17 Hb_001616_090 0.0790719959 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
18 Hb_000684_420 0.0791964028 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
19 Hb_012977_010 0.0810646139 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
20 Hb_000076_080 0.0816720544 - - PREDICTED: protein MOS2 [Jatropha curcas]

Gene co-expression network

sample Hb_001969_040 Hb_001969_040 Hb_000462_150 Hb_000462_150 Hb_001969_040--Hb_000462_150 Hb_000186_280 Hb_000186_280 Hb_001969_040--Hb_000186_280 Hb_003384_030 Hb_003384_030 Hb_001969_040--Hb_003384_030 Hb_018663_020 Hb_018663_020 Hb_001969_040--Hb_018663_020 Hb_004324_280 Hb_004324_280 Hb_001969_040--Hb_004324_280 Hb_002818_040 Hb_002818_040 Hb_001969_040--Hb_002818_040 Hb_000462_150--Hb_003384_030 Hb_000462_150--Hb_002818_040 Hb_000230_330 Hb_000230_330 Hb_000462_150--Hb_000230_330 Hb_001584_110 Hb_001584_110 Hb_000462_150--Hb_001584_110 Hb_000001_180 Hb_000001_180 Hb_000462_150--Hb_000001_180 Hb_000684_420 Hb_000684_420 Hb_000186_280--Hb_000684_420 Hb_002400_180 Hb_002400_180 Hb_000186_280--Hb_002400_180 Hb_000076_080 Hb_000076_080 Hb_000186_280--Hb_000076_080 Hb_000645_150 Hb_000645_150 Hb_000186_280--Hb_000645_150 Hb_012305_070 Hb_012305_070 Hb_000186_280--Hb_012305_070 Hb_003384_030--Hb_000001_180 Hb_005914_230 Hb_005914_230 Hb_003384_030--Hb_005914_230 Hb_003384_030--Hb_002818_040 Hb_003384_030--Hb_018663_020 Hb_018663_020--Hb_005914_230 Hb_001226_180 Hb_001226_180 Hb_018663_020--Hb_001226_180 Hb_000318_140 Hb_000318_140 Hb_018663_020--Hb_000318_140 Hb_001009_050 Hb_001009_050 Hb_018663_020--Hb_001009_050 Hb_004324_280--Hb_000186_280 Hb_004324_280--Hb_002818_040 Hb_000340_510 Hb_000340_510 Hb_004324_280--Hb_000340_510 Hb_004324_280--Hb_000462_150 Hb_001141_330 Hb_001141_330 Hb_004324_280--Hb_001141_330 Hb_002818_040--Hb_000340_510 Hb_002818_040--Hb_000001_180 Hb_005314_010 Hb_005314_010 Hb_002818_040--Hb_005314_010 Hb_002818_040--Hb_005914_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
446.024 135.833 72.3325 87.0202 351.342 434.922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
220.966 131.907 166.141 85.2293 47.3562

CAGE analysis