Hb_000001_180

Information

Type -
Description -
Location Contig1: 308969-314471
Sequence    

Annotation

kegg
ID rcu:RCOM_0423010
description hypothetical protein
nr
ID XP_012090880.1
description PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JDJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03069 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00129: 308855-314600
cDNA
(Sanger)
(ID:Location)		 003_A19.ab1: 309337-314585

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000001_180 0.0 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
2 Hb_003384_030 0.0448017269 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
3 Hb_002818_040 0.057260432 - - tRNA synthetase-related family protein [Populus trichocarpa]
4 Hb_004724_360 0.0603367635 - - OTU-like cysteine protease family protein [Populus trichocarpa]
5 Hb_005914_230 0.0653226327 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
6 Hb_005314_010 0.0656665323 - - nucleotide binding protein, putative [Ricinus communis]
7 Hb_004678_020 0.0661782453 - - PREDICTED: protein YIF1B [Jatropha curcas]
8 Hb_001504_160 0.0676814756 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
9 Hb_000462_150 0.0680879166 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
10 Hb_000076_080 0.0683859196 - - PREDICTED: protein MOS2 [Jatropha curcas]
11 Hb_000684_420 0.0698469843 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
12 Hb_000340_510 0.0702293434 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
13 Hb_012654_010 0.071146911 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
14 Hb_012305_070 0.0715396925 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002725_070 0.0743344991 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
16 Hb_000327_310 0.0769934908 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
17 Hb_001969_040 0.0777228265 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
18 Hb_004324_280 0.0785470441 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
19 Hb_000152_890 0.0790750459 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
20 Hb_001829_010 0.0806005397 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000001_180 Hb_000001_180 Hb_003384_030 Hb_003384_030 Hb_000001_180--Hb_003384_030 Hb_002818_040 Hb_002818_040 Hb_000001_180--Hb_002818_040 Hb_004724_360 Hb_004724_360 Hb_000001_180--Hb_004724_360 Hb_005914_230 Hb_005914_230 Hb_000001_180--Hb_005914_230 Hb_005314_010 Hb_005314_010 Hb_000001_180--Hb_005314_010 Hb_004678_020 Hb_004678_020 Hb_000001_180--Hb_004678_020 Hb_000462_150 Hb_000462_150 Hb_003384_030--Hb_000462_150 Hb_003384_030--Hb_005914_230 Hb_003384_030--Hb_002818_040 Hb_018663_020 Hb_018663_020 Hb_003384_030--Hb_018663_020 Hb_001969_040 Hb_001969_040 Hb_003384_030--Hb_001969_040 Hb_000340_510 Hb_000340_510 Hb_002818_040--Hb_000340_510 Hb_002818_040--Hb_000462_150 Hb_002818_040--Hb_005314_010 Hb_002818_040--Hb_005914_230 Hb_000076_080 Hb_000076_080 Hb_004724_360--Hb_000076_080 Hb_000327_310 Hb_000327_310 Hb_004724_360--Hb_000327_310 Hb_001504_160 Hb_001504_160 Hb_004724_360--Hb_001504_160 Hb_000684_420 Hb_000684_420 Hb_004724_360--Hb_000684_420 Hb_005295_040 Hb_005295_040 Hb_004724_360--Hb_005295_040 Hb_005914_230--Hb_018663_020 Hb_008725_250 Hb_008725_250 Hb_005914_230--Hb_008725_250 Hb_004310_060 Hb_004310_060 Hb_005914_230--Hb_004310_060 Hb_005147_110 Hb_005147_110 Hb_005914_230--Hb_005147_110 Hb_000413_130 Hb_000413_130 Hb_005314_010--Hb_000413_130 Hb_024399_010 Hb_024399_010 Hb_005314_010--Hb_024399_010 Hb_005314_010--Hb_005914_230 Hb_029281_010 Hb_029281_010 Hb_005314_010--Hb_029281_010 Hb_005701_040 Hb_005701_040 Hb_004678_020--Hb_005701_040 Hb_004678_020--Hb_003384_030 Hb_010222_080 Hb_010222_080 Hb_004678_020--Hb_010222_080 Hb_023001_020 Hb_023001_020 Hb_004678_020--Hb_023001_020 Hb_002942_220 Hb_002942_220 Hb_004678_020--Hb_002942_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
186.723 92.4341 33.0386 29.1042 227.287 226.17
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
106.754 83.6402 100.323 46.2769 23.8684

CAGE analysis