Hb_005701_040

Information

Type -
Description -
Location Contig5701: 29194-32572
Sequence    

Annotation

kegg
ID rcu:RCOM_1596490
description cellular nucleic acid binding protein, putative
nr
ID XP_002510478.1
description cellular nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID P53849
description Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIS2 PE=1 SV=1
trembl
ID B9R835
description Cellular nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1596490 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49322: 29300-33879 , PASA_asmbl_49323: 29300-33974 , PASA_asmbl_49324: 31083-31609 , PASA_asmbl_49325: 32963-33345 , PASA_asmbl_49326: 32443-32761
cDNA
(Sanger)
(ID:Location)		 032_E10.ab1: 29971-33971

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005701_040 0.0 - - cellular nucleic acid binding protein, putative [Ricinus communis]
2 Hb_001504_150 0.0608727763 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
3 Hb_004678_020 0.063178351 - - PREDICTED: protein YIF1B [Jatropha curcas]
4 Hb_012305_070 0.0707294612 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005914_230 0.0720583673 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
6 Hb_023001_020 0.0732881563 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
7 Hb_003656_160 0.0772050504 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
8 Hb_005237_060 0.0777536853 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
9 Hb_000001_180 0.0807389232 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
10 Hb_001616_090 0.081321777 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
11 Hb_003384_030 0.0817653777 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
12 Hb_001969_040 0.0851515382 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
13 Hb_000740_070 0.0865671465 - - -
14 Hb_001663_110 0.0879486389 - - RNA binding protein, putative [Ricinus communis]
15 Hb_009411_020 0.0889875614 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
16 Hb_004678_060 0.0892610848 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
17 Hb_004324_280 0.0899433768 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
18 Hb_004701_030 0.0904071219 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
19 Hb_018663_020 0.0913785789 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
20 Hb_010298_020 0.0913919915 - - PREDICTED: uncharacterized protein At2g02148 isoform X4 [Vitis vinifera]

Gene co-expression network

sample Hb_005701_040 Hb_005701_040 Hb_001504_150 Hb_001504_150 Hb_005701_040--Hb_001504_150 Hb_004678_020 Hb_004678_020 Hb_005701_040--Hb_004678_020 Hb_012305_070 Hb_012305_070 Hb_005701_040--Hb_012305_070 Hb_005914_230 Hb_005914_230 Hb_005701_040--Hb_005914_230 Hb_023001_020 Hb_023001_020 Hb_005701_040--Hb_023001_020 Hb_003656_160 Hb_003656_160 Hb_005701_040--Hb_003656_160 Hb_000666_110 Hb_000666_110 Hb_001504_150--Hb_000666_110 Hb_019962_030 Hb_019962_030 Hb_001504_150--Hb_019962_030 Hb_007164_020 Hb_007164_020 Hb_001504_150--Hb_007164_020 Hb_000205_120 Hb_000205_120 Hb_001504_150--Hb_000205_120 Hb_000085_240 Hb_000085_240 Hb_001504_150--Hb_000085_240 Hb_000001_180 Hb_000001_180 Hb_004678_020--Hb_000001_180 Hb_003384_030 Hb_003384_030 Hb_004678_020--Hb_003384_030 Hb_010222_080 Hb_010222_080 Hb_004678_020--Hb_010222_080 Hb_004678_020--Hb_023001_020 Hb_002942_220 Hb_002942_220 Hb_004678_020--Hb_002942_220 Hb_000684_420 Hb_000684_420 Hb_012305_070--Hb_000684_420 Hb_000645_150 Hb_000645_150 Hb_012305_070--Hb_000645_150 Hb_000186_280 Hb_000186_280 Hb_012305_070--Hb_000186_280 Hb_001014_010 Hb_001014_010 Hb_012305_070--Hb_001014_010 Hb_000236_370 Hb_000236_370 Hb_012305_070--Hb_000236_370 Hb_012305_070--Hb_003384_030 Hb_005914_230--Hb_003384_030 Hb_018663_020 Hb_018663_020 Hb_005914_230--Hb_018663_020 Hb_008725_250 Hb_008725_250 Hb_005914_230--Hb_008725_250 Hb_004310_060 Hb_004310_060 Hb_005914_230--Hb_004310_060 Hb_005914_230--Hb_000001_180 Hb_005147_110 Hb_005147_110 Hb_005914_230--Hb_005147_110 Hb_004701_030 Hb_004701_030 Hb_023001_020--Hb_004701_030 Hb_000139_250 Hb_000139_250 Hb_023001_020--Hb_000139_250 Hb_000104_080 Hb_000104_080 Hb_023001_020--Hb_000104_080 Hb_000923_040 Hb_000923_040 Hb_023001_020--Hb_000923_040 Hb_004678_060 Hb_004678_060 Hb_003656_160--Hb_004678_060 Hb_002301_220 Hb_002301_220 Hb_003656_160--Hb_002301_220 Hb_000343_210 Hb_000343_210 Hb_003656_160--Hb_000343_210 Hb_046615_020 Hb_046615_020 Hb_003656_160--Hb_046615_020 Hb_002007_350 Hb_002007_350 Hb_003656_160--Hb_002007_350 Hb_002400_180 Hb_002400_180 Hb_003656_160--Hb_002400_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.0952 38.1527 28.456 13.1063 79.5329 79.5707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.4759 31.5755 36.6929 14.7865 8.22966

CAGE analysis