Hb_003656_160

Information

Type transcription factor
Description TF Family: Alfin-like
Location Contig3656: 142687-143865
Sequence    

Annotation

kegg
ID egr:104437921
description PHD finger protein ALFIN-LIKE 4-like
nr
ID KJB82904.1
description hypothetical protein B456_013G226400 [Gossypium raimondii]
swissprot
ID Q9W0T1
description Nucleosome-remodeling factor subunit NURF301 OS=Drosophila melanogaster GN=E(bx) PE=1 SV=2
trembl
ID A0A0D2VIQ6
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G226400 PE=4 SV=1
Gene Ontology
ID GO:0008270
description phd finger protein alfin-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37648: 136019-143936
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003656_160 0.0 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
2 Hb_004678_060 0.0550721124 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
3 Hb_002301_220 0.0639988988 transcription factor TF Family: C3H PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]
4 Hb_000343_210 0.0676168016 - - ran-binding protein, putative [Ricinus communis]
5 Hb_046615_020 0.0697656792 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
6 Hb_002007_350 0.0700242034 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
7 Hb_002400_180 0.0702002444 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001226_180 0.0721676945 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
9 Hb_000327_310 0.0729140778 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
10 Hb_001975_020 0.0737349522 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
11 Hb_005701_040 0.0772050504 - - cellular nucleic acid binding protein, putative [Ricinus communis]
12 Hb_009265_080 0.0776123902 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
13 Hb_000104_080 0.0781074135 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
14 Hb_023001_020 0.0789407559 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
15 Hb_033594_020 0.0792056486 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
16 Hb_003020_110 0.0809044105 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
17 Hb_010222_080 0.0814892249 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
18 Hb_022408_010 0.0817205179 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
19 Hb_000424_010 0.0821153808 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
20 Hb_001366_040 0.0825922417 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003656_160 Hb_003656_160 Hb_004678_060 Hb_004678_060 Hb_003656_160--Hb_004678_060 Hb_002301_220 Hb_002301_220 Hb_003656_160--Hb_002301_220 Hb_000343_210 Hb_000343_210 Hb_003656_160--Hb_000343_210 Hb_046615_020 Hb_046615_020 Hb_003656_160--Hb_046615_020 Hb_002007_350 Hb_002007_350 Hb_003656_160--Hb_002007_350 Hb_002400_180 Hb_002400_180 Hb_003656_160--Hb_002400_180 Hb_004678_060--Hb_002400_180 Hb_009265_080 Hb_009265_080 Hb_004678_060--Hb_009265_080 Hb_008253_010 Hb_008253_010 Hb_004678_060--Hb_008253_010 Hb_004678_060--Hb_002007_350 Hb_003006_060 Hb_003006_060 Hb_004678_060--Hb_003006_060 Hb_001541_020 Hb_001541_020 Hb_002301_220--Hb_001541_020 Hb_008554_120 Hb_008554_120 Hb_002301_220--Hb_008554_120 Hb_000032_320 Hb_000032_320 Hb_002301_220--Hb_000032_320 Hb_001486_080 Hb_001486_080 Hb_002301_220--Hb_001486_080 Hb_022408_010 Hb_022408_010 Hb_002301_220--Hb_022408_010 Hb_147737_010 Hb_147737_010 Hb_000343_210--Hb_147737_010 Hb_002675_040 Hb_002675_040 Hb_000343_210--Hb_002675_040 Hb_000035_040 Hb_000035_040 Hb_000343_210--Hb_000035_040 Hb_000331_190 Hb_000331_190 Hb_000343_210--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_000343_210--Hb_000531_090 Hb_003020_110 Hb_003020_110 Hb_000343_210--Hb_003020_110 Hb_001975_020 Hb_001975_020 Hb_046615_020--Hb_001975_020 Hb_002043_170 Hb_002043_170 Hb_046615_020--Hb_002043_170 Hb_000230_370 Hb_000230_370 Hb_046615_020--Hb_000230_370 Hb_031754_010 Hb_031754_010 Hb_046615_020--Hb_031754_010 Hb_004096_020 Hb_004096_020 Hb_046615_020--Hb_004096_020 Hb_046615_020--Hb_000531_090 Hb_002007_350--Hb_009265_080 Hb_002007_350--Hb_008253_010 Hb_007590_080 Hb_007590_080 Hb_002007_350--Hb_007590_080 Hb_000803_300 Hb_000803_300 Hb_002007_350--Hb_000803_300 Hb_003581_120 Hb_003581_120 Hb_002400_180--Hb_003581_120 Hb_000684_420 Hb_000684_420 Hb_002400_180--Hb_000684_420 Hb_002400_180--Hb_000803_300 Hb_002097_090 Hb_002097_090 Hb_002400_180--Hb_002097_090 Hb_000034_050 Hb_000034_050 Hb_002400_180--Hb_000034_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
137.389 62.5702 42.8405 24.6179 118.66 116.689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.972 37.5797 62.0696 35.2769 26.7658

CAGE analysis