Hb_007590_080

Information

Type -
Description -
Location Contig7590: 41494-43910
Sequence    

Annotation

kegg
ID mdm:103447391
description peptidyl-prolyl cis-trans isomerase CYP19-4
nr
ID XP_008384800.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
swissprot
ID Q8LDP4
description Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2
trembl
ID M5WJY1
description Peptidyl-prolyl cis-trans isomerase OS=Prunus persica GN=PRUPE_ppa011595mg PE=3 SV=1
Gene Ontology
ID GO:0003755
description peptidyl-prolyl cis-trans isomerase cyp19-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57171: 41540-43945 , PASA_asmbl_57172: 42486-42784
cDNA
(Sanger)
(ID:Location)		 031_C22.ab1: 41747-43945 , 035_D10.ab1: 41763-43945 , 040_F10.ab1: 41751-43945 , 046_N05.ab1: 41804-43945

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007590_080 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
2 Hb_007336_020 0.0531967968 - - Mannose-P-dolichol utilization defect 1 protein, putative [Ricinus communis]
3 Hb_002007_350 0.0645876839 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
4 Hb_007894_140 0.0648814572 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
5 Hb_008253_010 0.0674626768 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
6 Hb_000100_070 0.0678055631 - - PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Jatropha curcas]
7 Hb_000803_300 0.0678255463 - - nuclear movement protein nudc, putative [Ricinus communis]
8 Hb_007632_020 0.0678577309 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
9 Hb_002400_180 0.068232398 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000789_080 0.0691073835 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
11 Hb_003581_120 0.0707485192 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
12 Hb_009265_080 0.0708223406 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
13 Hb_004678_060 0.0709058011 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
14 Hb_002475_160 0.0712735746 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
15 Hb_010931_080 0.0778070434 - - PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Jatropha curcas]
16 Hb_026099_010 0.077884191 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
17 Hb_008695_120 0.0783243952 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
18 Hb_000879_140 0.0790984927 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
19 Hb_003020_110 0.0794685772 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
20 Hb_164010_060 0.0799778583 - - PREDICTED: uncharacterized protein LOC105633115 [Jatropha curcas]

Gene co-expression network

sample Hb_007590_080 Hb_007590_080 Hb_007336_020 Hb_007336_020 Hb_007590_080--Hb_007336_020 Hb_002007_350 Hb_002007_350 Hb_007590_080--Hb_002007_350 Hb_007894_140 Hb_007894_140 Hb_007590_080--Hb_007894_140 Hb_008253_010 Hb_008253_010 Hb_007590_080--Hb_008253_010 Hb_000100_070 Hb_000100_070 Hb_007590_080--Hb_000100_070 Hb_000803_300 Hb_000803_300 Hb_007590_080--Hb_000803_300 Hb_002475_160 Hb_002475_160 Hb_007336_020--Hb_002475_160 Hb_000322_100 Hb_000322_100 Hb_007336_020--Hb_000322_100 Hb_011942_080 Hb_011942_080 Hb_007336_020--Hb_011942_080 Hb_001369_180 Hb_001369_180 Hb_007336_020--Hb_001369_180 Hb_007336_020--Hb_008253_010 Hb_009265_080 Hb_009265_080 Hb_002007_350--Hb_009265_080 Hb_002007_350--Hb_008253_010 Hb_004678_060 Hb_004678_060 Hb_002007_350--Hb_004678_060 Hb_002007_350--Hb_000803_300 Hb_003656_160 Hb_003656_160 Hb_002007_350--Hb_003656_160 Hb_033153_050 Hb_033153_050 Hb_007894_140--Hb_033153_050 Hb_007218_080 Hb_007218_080 Hb_007894_140--Hb_007218_080 Hb_001862_190 Hb_001862_190 Hb_007894_140--Hb_001862_190 Hb_006663_100 Hb_006663_100 Hb_007894_140--Hb_006663_100 Hb_007894_140--Hb_007336_020 Hb_008253_010--Hb_009265_080 Hb_008253_010--Hb_004678_060 Hb_134364_010 Hb_134364_010 Hb_008253_010--Hb_134364_010 Hb_108216_040 Hb_108216_040 Hb_000100_070--Hb_108216_040 Hb_002798_040 Hb_002798_040 Hb_000100_070--Hb_002798_040 Hb_002400_180 Hb_002400_180 Hb_000100_070--Hb_002400_180 Hb_000640_320 Hb_000640_320 Hb_000100_070--Hb_000640_320 Hb_000100_070--Hb_002007_350 Hb_002097_090 Hb_002097_090 Hb_000803_300--Hb_002097_090 Hb_000803_300--Hb_002400_180 Hb_000522_090 Hb_000522_090 Hb_000803_300--Hb_000522_090 Hb_005245_130 Hb_005245_130 Hb_000803_300--Hb_005245_130 Hb_000803_300--Hb_009265_080 Hb_000139_250 Hb_000139_250 Hb_000803_300--Hb_000139_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
377.043 169.275 94.9762 112.684 296.595 309.527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
291.419 126.283 150.626 125.311 93.065

CAGE analysis