Hb_001862_190

Information

Type -
Description -
Location Contig1862: 219152-229217
Sequence    

Annotation

kegg
ID rcu:RCOM_1154620
description Polyadenylation factor subunit, putative (EC:2.3.1.48)
nr
ID XP_012079331.1
description PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
swissprot
ID Q8BHJ5
description F-box-like/WD repeat-containing protein TBL1XR1 OS=Mus musculus GN=Tbl1xr1 PE=1 SV=1
trembl
ID A0A067KAH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12479 PE=4 SV=1
Gene Ontology
ID GO:0004402
description f-box-like wd repeat-containing protein tbl1xr1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18310: 219273-229126
cDNA
(Sanger)
(ID:Location)		 018_F11.ab1: 227619-229126 , 020_O22.ab1: 227567-229126

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001862_190 0.0 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
2 Hb_033153_050 0.0583376852 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
3 Hb_000134_090 0.0603707904 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
4 Hb_006922_100 0.0633946206 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
5 Hb_001322_190 0.0688764714 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
6 Hb_005662_030 0.0691455048 - - protein with unknown function [Ricinus communis]
7 Hb_007477_080 0.0727995803 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007894_140 0.0730318822 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
9 Hb_005306_110 0.0737669807 - - casein kinase, putative [Ricinus communis]
10 Hb_076787_010 0.0748179756 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
11 Hb_004724_200 0.0779139954 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
12 Hb_007218_080 0.0785250695 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
13 Hb_000120_950 0.0786437342 - - PREDICTED: protein GRIP [Jatropha curcas]
14 Hb_003376_040 0.0786443383 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
15 Hb_002030_030 0.0789327724 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
16 Hb_000620_010 0.0791521559 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
17 Hb_001454_210 0.0793601441 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
18 Hb_000030_010 0.079635655 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
19 Hb_000699_140 0.0796382079 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
20 Hb_004812_010 0.0805679354 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Jatropha curcas]

Gene co-expression network

sample Hb_001862_190 Hb_001862_190 Hb_033153_050 Hb_033153_050 Hb_001862_190--Hb_033153_050 Hb_000134_090 Hb_000134_090 Hb_001862_190--Hb_000134_090 Hb_006922_100 Hb_006922_100 Hb_001862_190--Hb_006922_100 Hb_001322_190 Hb_001322_190 Hb_001862_190--Hb_001322_190 Hb_005662_030 Hb_005662_030 Hb_001862_190--Hb_005662_030 Hb_007477_080 Hb_007477_080 Hb_001862_190--Hb_007477_080 Hb_005306_110 Hb_005306_110 Hb_033153_050--Hb_005306_110 Hb_007894_140 Hb_007894_140 Hb_033153_050--Hb_007894_140 Hb_001635_170 Hb_001635_170 Hb_033153_050--Hb_001635_170 Hb_029920_050 Hb_029920_050 Hb_033153_050--Hb_029920_050 Hb_033843_010 Hb_033843_010 Hb_033153_050--Hb_033843_010 Hb_002030_030 Hb_002030_030 Hb_000134_090--Hb_002030_030 Hb_004096_030 Hb_004096_030 Hb_000134_090--Hb_004096_030 Hb_004934_090 Hb_004934_090 Hb_000134_090--Hb_004934_090 Hb_000134_090--Hb_006922_100 Hb_004724_200 Hb_004724_200 Hb_000134_090--Hb_004724_200 Hb_005663_060 Hb_005663_060 Hb_006922_100--Hb_005663_060 Hb_004055_030 Hb_004055_030 Hb_006922_100--Hb_004055_030 Hb_000020_190 Hb_000020_190 Hb_006922_100--Hb_000020_190 Hb_007441_120 Hb_007441_120 Hb_006922_100--Hb_007441_120 Hb_001199_020 Hb_001199_020 Hb_006922_100--Hb_001199_020 Hb_005396_130 Hb_005396_130 Hb_001322_190--Hb_005396_130 Hb_001322_190--Hb_000020_190 Hb_001019_230 Hb_001019_230 Hb_001322_190--Hb_001019_230 Hb_000699_140 Hb_000699_140 Hb_001322_190--Hb_000699_140 Hb_001322_190--Hb_006922_100 Hb_000620_010 Hb_000620_010 Hb_005662_030--Hb_000620_010 Hb_000184_110 Hb_000184_110 Hb_005662_030--Hb_000184_110 Hb_000028_610 Hb_000028_610 Hb_005662_030--Hb_000028_610 Hb_006065_020 Hb_006065_020 Hb_005662_030--Hb_006065_020 Hb_001017_040 Hb_001017_040 Hb_005662_030--Hb_001017_040 Hb_006816_390 Hb_006816_390 Hb_007477_080--Hb_006816_390 Hb_001100_050 Hb_001100_050 Hb_007477_080--Hb_001100_050 Hb_007477_080--Hb_033153_050 Hb_007477_080--Hb_000134_090 Hb_007477_080--Hb_000699_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.1891 16.1378 12.1545 13.2649 28.6813 41.8279
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.5498 25.9718 31.8153 13.7184 15.2897

CAGE analysis