Hb_006816_390

Information

Type -
Description -
Location Contig6816: 244794-248758
Sequence    

Annotation

kegg
ID rcu:RCOM_1434210
description protein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_002512477.1
description protein phosphatase, putative [Ricinus communis]
swissprot
ID O80492
description Probable protein phosphatase 2C 5 OS=Arabidopsis thaliana GN=At1g09160 PE=2 SV=1
trembl
ID B9RFF8
description Protein phosphatase, putative OS=Ricinus communis GN=RCOM_1434210 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable protein phosphatase 2c 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53843: 244903-248714 , PASA_asmbl_53844: 245039-245379
cDNA
(Sanger)
(ID:Location)		 005_F12.ab1: 244903-247048 , 007_M10.ab1: 244903-247033 , 043_D15.ab1: 244903-246979

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_390 0.0 - - protein phosphatase, putative [Ricinus communis]
2 Hb_007477_080 0.0711453683 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000034_050 0.0790617621 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
4 Hb_000134_090 0.0797761447 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
5 Hb_002529_060 0.080570277 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107 [Jatropha curcas]
6 Hb_001100_050 0.0861625576 - - PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Malus domestica]
7 Hb_000042_270 0.0888967329 - - myosin vIII, putative [Ricinus communis]
8 Hb_000481_040 0.0904821217 - - developmentally regulated GTP-binding protein, putative [Ricinus communis]
9 Hb_000322_100 0.0907636096 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
10 Hb_003641_050 0.0918814306 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]
11 Hb_006951_020 0.0943111846 - - Rop3 [Hevea brasiliensis]
12 Hb_002200_130 0.0950012554 - - PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Jatropha curcas]
13 Hb_005883_050 0.0956126177 - - PREDICTED: transportin-3 [Jatropha curcas]
14 Hb_003502_080 0.0959482399 - - vacuolar protein sorting, putative [Ricinus communis]
15 Hb_000197_210 0.0979916226 - - phosphatidylinositol transporter, putative [Ricinus communis]
16 Hb_000943_070 0.0981272212 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
17 Hb_000390_060 0.0992403121 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
18 Hb_000236_380 0.1007097524 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
19 Hb_000120_500 0.1018865212 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
20 Hb_000364_010 0.102512946 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]

Gene co-expression network

sample Hb_006816_390 Hb_006816_390 Hb_007477_080 Hb_007477_080 Hb_006816_390--Hb_007477_080 Hb_000034_050 Hb_000034_050 Hb_006816_390--Hb_000034_050 Hb_000134_090 Hb_000134_090 Hb_006816_390--Hb_000134_090 Hb_002529_060 Hb_002529_060 Hb_006816_390--Hb_002529_060 Hb_001100_050 Hb_001100_050 Hb_006816_390--Hb_001100_050 Hb_000042_270 Hb_000042_270 Hb_006816_390--Hb_000042_270 Hb_007477_080--Hb_001100_050 Hb_001862_190 Hb_001862_190 Hb_007477_080--Hb_001862_190 Hb_033153_050 Hb_033153_050 Hb_007477_080--Hb_033153_050 Hb_007477_080--Hb_000134_090 Hb_000699_140 Hb_000699_140 Hb_007477_080--Hb_000699_140 Hb_002400_180 Hb_002400_180 Hb_000034_050--Hb_002400_180 Hb_000322_100 Hb_000322_100 Hb_000034_050--Hb_000322_100 Hb_009265_080 Hb_009265_080 Hb_000034_050--Hb_009265_080 Hb_001863_110 Hb_001863_110 Hb_000034_050--Hb_001863_110 Hb_003581_120 Hb_003581_120 Hb_000034_050--Hb_003581_120 Hb_000390_060 Hb_000390_060 Hb_000034_050--Hb_000390_060 Hb_002030_030 Hb_002030_030 Hb_000134_090--Hb_002030_030 Hb_000134_090--Hb_001862_190 Hb_004096_030 Hb_004096_030 Hb_000134_090--Hb_004096_030 Hb_004934_090 Hb_004934_090 Hb_000134_090--Hb_004934_090 Hb_006922_100 Hb_006922_100 Hb_000134_090--Hb_006922_100 Hb_004724_200 Hb_004724_200 Hb_000134_090--Hb_004724_200 Hb_000645_050 Hb_000645_050 Hb_002529_060--Hb_000645_050 Hb_000465_430 Hb_000465_430 Hb_002529_060--Hb_000465_430 Hb_002495_040 Hb_002495_040 Hb_002529_060--Hb_002495_040 Hb_003502_080 Hb_003502_080 Hb_002529_060--Hb_003502_080 Hb_002529_060--Hb_000322_100 Hb_001100_050--Hb_000699_140 Hb_000620_010 Hb_000620_010 Hb_001100_050--Hb_000620_010 Hb_003641_050 Hb_003641_050 Hb_001100_050--Hb_003641_050 Hb_000072_220 Hb_000072_220 Hb_001100_050--Hb_000072_220 Hb_000197_210 Hb_000197_210 Hb_000042_270--Hb_000197_210 Hb_000679_130 Hb_000679_130 Hb_000042_270--Hb_000679_130 Hb_000042_270--Hb_000034_050 Hb_000236_380 Hb_000236_380 Hb_000042_270--Hb_000236_380 Hb_000836_630 Hb_000836_630 Hb_000042_270--Hb_000836_630
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
74.1684 27.5675 25.3935 40.7469 65.8913 100.644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.6019 27.7932 58.99 17.8658 26.0994

CAGE analysis