Hb_002400_180

Information

Type -
Description -
Location Contig2400: 156258-162747
Sequence    

Annotation

kegg
ID rcu:RCOM_0923590
description hypothetical protein
nr
ID XP_002515494.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RP25
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0923590 PE=4 SV=1
Gene Ontology
ID GO:0035091
description phox domain-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25164: 156277-157986 , PASA_asmbl_25165: 158042-158280 , PASA_asmbl_25166: 158060-158719 , PASA_asmbl_25167: 159121-159352
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003581_120 0.0366308351 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
3 Hb_000684_420 0.0532740582 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
4 Hb_004678_060 0.0533848016 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
5 Hb_000803_300 0.0573239484 - - nuclear movement protein nudc, putative [Ricinus communis]
6 Hb_002097_090 0.0583593334 - - Splicing factor 3A subunit, putative [Ricinus communis]
7 Hb_000034_050 0.0593752244 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
8 Hb_009265_080 0.0606672759 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
9 Hb_000076_080 0.061766332 - - PREDICTED: protein MOS2 [Jatropha curcas]
10 Hb_000186_280 0.062014387 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
11 Hb_001019_170 0.0657975628 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
12 Hb_000789_080 0.0663202891 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
13 Hb_000640_320 0.0667238011 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
14 Hb_001226_180 0.0671835368 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
15 Hb_007590_080 0.068232398 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
16 Hb_031754_010 0.0682919472 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
17 Hb_003656_160 0.0702002444 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
18 Hb_000100_070 0.0710074232 - - PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Jatropha curcas]
19 Hb_000645_150 0.0710483191 - - zinc finger protein, putative [Ricinus communis]
20 Hb_003020_110 0.0715563543 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_002400_180 Hb_002400_180 Hb_003581_120 Hb_003581_120 Hb_002400_180--Hb_003581_120 Hb_000684_420 Hb_000684_420 Hb_002400_180--Hb_000684_420 Hb_004678_060 Hb_004678_060 Hb_002400_180--Hb_004678_060 Hb_000803_300 Hb_000803_300 Hb_002400_180--Hb_000803_300 Hb_002097_090 Hb_002097_090 Hb_002400_180--Hb_002097_090 Hb_000034_050 Hb_000034_050 Hb_002400_180--Hb_000034_050 Hb_008695_120 Hb_008695_120 Hb_003581_120--Hb_008695_120 Hb_003581_120--Hb_002097_090 Hb_003581_120--Hb_000803_300 Hb_001019_170 Hb_001019_170 Hb_003581_120--Hb_001019_170 Hb_003581_120--Hb_000034_050 Hb_000076_080 Hb_000076_080 Hb_000684_420--Hb_000076_080 Hb_000684_420--Hb_002097_090 Hb_000186_280 Hb_000186_280 Hb_000684_420--Hb_000186_280 Hb_004724_360 Hb_004724_360 Hb_000684_420--Hb_004724_360 Hb_073171_080 Hb_073171_080 Hb_000684_420--Hb_073171_080 Hb_003656_160 Hb_003656_160 Hb_004678_060--Hb_003656_160 Hb_009265_080 Hb_009265_080 Hb_004678_060--Hb_009265_080 Hb_008253_010 Hb_008253_010 Hb_004678_060--Hb_008253_010 Hb_002007_350 Hb_002007_350 Hb_004678_060--Hb_002007_350 Hb_003006_060 Hb_003006_060 Hb_004678_060--Hb_003006_060 Hb_000803_300--Hb_002097_090 Hb_000522_090 Hb_000522_090 Hb_000803_300--Hb_000522_090 Hb_005245_130 Hb_005245_130 Hb_000803_300--Hb_005245_130 Hb_000803_300--Hb_009265_080 Hb_000139_250 Hb_000139_250 Hb_000803_300--Hb_000139_250 Hb_000645_150 Hb_000645_150 Hb_002097_090--Hb_000645_150 Hb_004934_090 Hb_004934_090 Hb_002097_090--Hb_004934_090 Hb_002097_090--Hb_000076_080 Hb_009620_040 Hb_009620_040 Hb_002097_090--Hb_009620_040 Hb_000322_100 Hb_000322_100 Hb_000034_050--Hb_000322_100 Hb_000034_050--Hb_009265_080 Hb_001863_110 Hb_001863_110 Hb_000034_050--Hb_001863_110 Hb_000390_060 Hb_000390_060 Hb_000034_050--Hb_000390_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.0858 20.7815 9.80605 11.1196 42.222 47.5494
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.5358 16.9685 18.2711 14.58 11.3755

CAGE analysis