Hb_000139_250

Information

Type -
Description -
Location Contig139: 273264-283551
Sequence    

Annotation

kegg
ID rcu:RCOM_0913800
description Protein C9orf114, putative
nr
ID XP_012069571.1
description PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
swissprot
ID Q5T280
description Putative methyltransferase C9orf114 OS=Homo sapiens GN=C9orf114 PE=1 SV=3
trembl
ID A0A067L6L4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02138 PE=4 SV=1
Gene Ontology
ID GO:0005622
description methyltransferase c9orf114

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10636: 273091-283543 , PASA_asmbl_10637: 276505-276748
cDNA
(Sanger)
(ID:Location)		 022_I12.ab1: 282402-283509

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_250 0.0 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
2 Hb_002942_220 0.0547465752 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
3 Hb_023001_020 0.0569593515 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
4 Hb_000424_010 0.0603314749 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
5 Hb_012654_010 0.0630060373 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
6 Hb_000803_300 0.0637863586 - - nuclear movement protein nudc, putative [Ricinus communis]
7 Hb_144787_030 0.0641659455 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
8 Hb_001504_160 0.0684496205 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
9 Hb_001541_260 0.0686460042 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
10 Hb_004162_280 0.0689569172 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
11 Hb_010222_080 0.0700815332 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
12 Hb_003581_120 0.0711819041 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
13 Hb_002400_180 0.0723021251 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002652_040 0.0755321663 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
15 Hb_004678_020 0.0770804681 - - PREDICTED: protein YIF1B [Jatropha curcas]
16 Hb_012305_070 0.0774803046 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001584_290 0.0788410602 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
18 Hb_001541_020 0.0788602701 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
19 Hb_003020_110 0.0796115967 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
20 Hb_005245_130 0.0804151248 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]

Gene co-expression network

sample Hb_000139_250 Hb_000139_250 Hb_002942_220 Hb_002942_220 Hb_000139_250--Hb_002942_220 Hb_023001_020 Hb_023001_020 Hb_000139_250--Hb_023001_020 Hb_000424_010 Hb_000424_010 Hb_000139_250--Hb_000424_010 Hb_012654_010 Hb_012654_010 Hb_000139_250--Hb_012654_010 Hb_000803_300 Hb_000803_300 Hb_000139_250--Hb_000803_300 Hb_144787_030 Hb_144787_030 Hb_000139_250--Hb_144787_030 Hb_010222_080 Hb_010222_080 Hb_002942_220--Hb_010222_080 Hb_002400_180 Hb_002400_180 Hb_002942_220--Hb_002400_180 Hb_004678_020 Hb_004678_020 Hb_002942_220--Hb_004678_020 Hb_017168_010 Hb_017168_010 Hb_002942_220--Hb_017168_010 Hb_002942_220--Hb_144787_030 Hb_004701_030 Hb_004701_030 Hb_023001_020--Hb_004701_030 Hb_000104_080 Hb_000104_080 Hb_023001_020--Hb_000104_080 Hb_000923_040 Hb_000923_040 Hb_023001_020--Hb_000923_040 Hb_023001_020--Hb_004678_020 Hb_005701_040 Hb_005701_040 Hb_023001_020--Hb_005701_040 Hb_000035_040 Hb_000035_040 Hb_000424_010--Hb_000035_040 Hb_002652_040 Hb_002652_040 Hb_000424_010--Hb_002652_040 Hb_002221_050 Hb_002221_050 Hb_000424_010--Hb_002221_050 Hb_000529_260 Hb_000529_260 Hb_000424_010--Hb_000529_260 Hb_175338_020 Hb_175338_020 Hb_000424_010--Hb_175338_020 Hb_001504_160 Hb_001504_160 Hb_012654_010--Hb_001504_160 Hb_000107_100 Hb_000107_100 Hb_012654_010--Hb_000107_100 Hb_001057_010 Hb_001057_010 Hb_012654_010--Hb_001057_010 Hb_005214_160 Hb_005214_160 Hb_012654_010--Hb_005214_160 Hb_002701_080 Hb_002701_080 Hb_012654_010--Hb_002701_080 Hb_002097_090 Hb_002097_090 Hb_000803_300--Hb_002097_090 Hb_000803_300--Hb_002400_180 Hb_000522_090 Hb_000522_090 Hb_000803_300--Hb_000522_090 Hb_005245_130 Hb_005245_130 Hb_000803_300--Hb_005245_130 Hb_009265_080 Hb_009265_080 Hb_000803_300--Hb_009265_080 Hb_004162_280 Hb_004162_280 Hb_144787_030--Hb_004162_280 Hb_001541_260 Hb_001541_260 Hb_144787_030--Hb_001541_260 Hb_000946_120 Hb_000946_120 Hb_144787_030--Hb_000946_120 Hb_000236_100 Hb_000236_100 Hb_144787_030--Hb_000236_100 Hb_000422_140 Hb_000422_140 Hb_144787_030--Hb_000422_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.4831 22.9444 11.9892 10.0076 57.986 42.3284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.7979 19.051 20.7055 16.9118 9.90186

CAGE analysis