Hb_017168_010

Information

Type -
Description -
Location Contig17168: 9381-14595
Sequence    

Annotation

kegg
ID rcu:RCOM_1290830
description hypothetical protein
nr
ID XP_002524136.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P37707
description B2 protein OS=Daucus carota PE=2 SV=1
trembl
ID B9SDR7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1290830 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017168_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000107_100 0.0666412261 - - hypothetical protein JCGZ_16208 [Jatropha curcas]
3 Hb_010222_080 0.0678291373 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
4 Hb_000340_510 0.0715614889 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
5 Hb_002026_110 0.0763241726 - - protein binding protein, putative [Ricinus communis]
6 Hb_002942_220 0.0766240803 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
7 Hb_012132_030 0.077669433 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
8 Hb_012654_010 0.0806327321 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
9 Hb_002818_040 0.0827803167 - - tRNA synthetase-related family protein [Populus trichocarpa]
10 Hb_004678_020 0.0828375074 - - PREDICTED: protein YIF1B [Jatropha curcas]
11 Hb_001504_160 0.0832001162 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
12 Hb_002007_250 0.0835617633 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004724_360 0.0842661316 - - OTU-like cysteine protease family protein [Populus trichocarpa]
14 Hb_001040_170 0.0845782911 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_000139_250 0.0875458989 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
16 Hb_000001_180 0.0891654426 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
17 Hb_000152_890 0.0892270909 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
18 Hb_001057_010 0.0903785227 - - cation-transporting atpase plant, putative [Ricinus communis]
19 Hb_033834_010 0.0937477656 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
20 Hb_001141_330 0.0943809395 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]

Gene co-expression network

sample Hb_017168_010 Hb_017168_010 Hb_000107_100 Hb_000107_100 Hb_017168_010--Hb_000107_100 Hb_010222_080 Hb_010222_080 Hb_017168_010--Hb_010222_080 Hb_000340_510 Hb_000340_510 Hb_017168_010--Hb_000340_510 Hb_002026_110 Hb_002026_110 Hb_017168_010--Hb_002026_110 Hb_002942_220 Hb_002942_220 Hb_017168_010--Hb_002942_220 Hb_012132_030 Hb_012132_030 Hb_017168_010--Hb_012132_030 Hb_001504_160 Hb_001504_160 Hb_000107_100--Hb_001504_160 Hb_012654_010 Hb_012654_010 Hb_000107_100--Hb_012654_010 Hb_000107_100--Hb_000340_510 Hb_001040_170 Hb_001040_170 Hb_000107_100--Hb_001040_170 Hb_001366_040 Hb_001366_040 Hb_000107_100--Hb_001366_040 Hb_001584_290 Hb_001584_290 Hb_010222_080--Hb_001584_290 Hb_010222_080--Hb_002942_220 Hb_000139_250 Hb_000139_250 Hb_010222_080--Hb_000139_250 Hb_004678_020 Hb_004678_020 Hb_010222_080--Hb_004678_020 Hb_004162_280 Hb_004162_280 Hb_010222_080--Hb_004162_280 Hb_002818_040 Hb_002818_040 Hb_000340_510--Hb_002818_040 Hb_000481_010 Hb_000481_010 Hb_000340_510--Hb_000481_010 Hb_000001_180 Hb_000001_180 Hb_000340_510--Hb_000001_180 Hb_000340_510--Hb_002026_110 Hb_001141_330 Hb_001141_330 Hb_002026_110--Hb_001141_330 Hb_002026_110--Hb_000481_010 Hb_002026_110--Hb_002818_040 Hb_029281_010 Hb_029281_010 Hb_002026_110--Hb_029281_010 Hb_002942_220--Hb_000139_250 Hb_002400_180 Hb_002400_180 Hb_002942_220--Hb_002400_180 Hb_002942_220--Hb_004678_020 Hb_144787_030 Hb_144787_030 Hb_002942_220--Hb_144787_030 Hb_000946_120 Hb_000946_120 Hb_012132_030--Hb_000946_120 Hb_012132_030--Hb_010222_080 Hb_001541_260 Hb_001541_260 Hb_012132_030--Hb_001541_260 Hb_012132_030--Hb_144787_030 Hb_001136_100 Hb_001136_100 Hb_012132_030--Hb_001136_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8116 4.35408 2.13471 1.46123 14.2506 9.44048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.221 4.79473 6.61398 2.98956 2.47357

CAGE analysis