Hb_001040_170

Information

Type -
Description -
Location Contig1040: 216335-218545
Sequence    

Annotation

kegg
ID rcu:RCOM_0936200
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012091593.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID Q84JR3
description Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1
trembl
ID B9RZ85
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0936200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01478: 217287-218348
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001040_170 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_000107_100 0.0768712757 - - hypothetical protein JCGZ_16208 [Jatropha curcas]
3 Hb_006091_030 0.0842448769 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
4 Hb_017168_010 0.0845782911 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000327_240 0.0881881559 - - PREDICTED: interaptin-like [Jatropha curcas]
6 Hb_005237_010 0.0917181884 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
7 Hb_000340_510 0.0919091702 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
8 Hb_007447_010 0.0964705991 - - PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]
9 Hb_002631_050 0.09756499 - - membrane associated ring finger 1,8, putative [Ricinus communis]
10 Hb_011316_110 0.0979972285 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
11 Hb_002007_250 0.0989305047 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000078_130 0.099212242 - - -
13 Hb_011344_010 0.0995297493 - - PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Jatropha curcas]
14 Hb_012654_010 0.1001884715 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
15 Hb_185467_020 0.1002274611 - - Cucumisin precursor, putative [Ricinus communis]
16 Hb_000161_030 0.1008197236 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
17 Hb_000490_030 0.1021334347 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
18 Hb_002400_270 0.1044185373 - - PREDICTED: probable sucrose-phosphate synthase 1 isoform X1 [Jatropha curcas]
19 Hb_041091_010 0.1057530815 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
20 Hb_000733_060 0.1059606705 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001040_170 Hb_001040_170 Hb_000107_100 Hb_000107_100 Hb_001040_170--Hb_000107_100 Hb_006091_030 Hb_006091_030 Hb_001040_170--Hb_006091_030 Hb_017168_010 Hb_017168_010 Hb_001040_170--Hb_017168_010 Hb_000327_240 Hb_000327_240 Hb_001040_170--Hb_000327_240 Hb_005237_010 Hb_005237_010 Hb_001040_170--Hb_005237_010 Hb_000340_510 Hb_000340_510 Hb_001040_170--Hb_000340_510 Hb_001504_160 Hb_001504_160 Hb_000107_100--Hb_001504_160 Hb_012654_010 Hb_012654_010 Hb_000107_100--Hb_012654_010 Hb_000107_100--Hb_017168_010 Hb_000107_100--Hb_000340_510 Hb_001366_040 Hb_001366_040 Hb_000107_100--Hb_001366_040 Hb_000490_030 Hb_000490_030 Hb_006091_030--Hb_000490_030 Hb_000358_080 Hb_000358_080 Hb_006091_030--Hb_000358_080 Hb_002874_070 Hb_002874_070 Hb_006091_030--Hb_002874_070 Hb_000016_110 Hb_000016_110 Hb_006091_030--Hb_000016_110 Hb_000413_130 Hb_000413_130 Hb_006091_030--Hb_000413_130 Hb_000078_130 Hb_000078_130 Hb_006091_030--Hb_000078_130 Hb_010222_080 Hb_010222_080 Hb_017168_010--Hb_010222_080 Hb_017168_010--Hb_000340_510 Hb_002026_110 Hb_002026_110 Hb_017168_010--Hb_002026_110 Hb_002942_220 Hb_002942_220 Hb_017168_010--Hb_002942_220 Hb_012132_030 Hb_012132_030 Hb_017168_010--Hb_012132_030 Hb_001416_040 Hb_001416_040 Hb_000327_240--Hb_001416_040 Hb_002400_270 Hb_002400_270 Hb_000327_240--Hb_002400_270 Hb_000284_200 Hb_000284_200 Hb_000327_240--Hb_000284_200 Hb_000984_180 Hb_000984_180 Hb_000327_240--Hb_000984_180 Hb_006816_290 Hb_006816_290 Hb_000327_240--Hb_006816_290 Hb_003097_150 Hb_003097_150 Hb_005237_010--Hb_003097_150 Hb_004600_040 Hb_004600_040 Hb_005237_010--Hb_004600_040 Hb_005928_060 Hb_005928_060 Hb_005237_010--Hb_005928_060 Hb_005237_010--Hb_012654_010 Hb_000815_210 Hb_000815_210 Hb_005237_010--Hb_000815_210 Hb_002007_250 Hb_002007_250 Hb_005237_010--Hb_002007_250 Hb_002818_040 Hb_002818_040 Hb_000340_510--Hb_002818_040 Hb_000481_010 Hb_000481_010 Hb_000340_510--Hb_000481_010 Hb_000001_180 Hb_000001_180 Hb_000340_510--Hb_000001_180 Hb_000340_510--Hb_002026_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.72593 2.10688 0.879852 0.893016 10.9454 8.03965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.34033 4.18085 6.5144 2.46905 1.85113

CAGE analysis