Hb_001416_040

Information

Type -
Description -
Location Contig1416: 59443-97908
Sequence    

Annotation

kegg
ID rcu:RCOM_0854040
description acid phosphatase, putative
nr
ID XP_002517456.1
description acid phosphatase, putative [Ricinus communis]
swissprot
ID Q5XHF8
description Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 OS=Xenopus laevis GN=ppip5k2 PE=2 SV=1
trembl
ID B9RUL1
description Acid phosphatase, putative OS=Ricinus communis GN=RCOM_0854040 PE=4 SV=1
Gene Ontology
ID GO:0003993
description inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11178: 59529-65297 , PASA_asmbl_11179: 67655-68007 , PASA_asmbl_11180: 72017-92135 , PASA_asmbl_11181: 79938-80272 , PASA_asmbl_11182: 92136-93418
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001416_040 0.0 - - acid phosphatase, putative [Ricinus communis]
2 Hb_006816_290 0.080387025 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
3 Hb_000327_240 0.0818365623 - - PREDICTED: interaptin-like [Jatropha curcas]
4 Hb_000984_180 0.0894511863 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO3 isoform X1 [Jatropha curcas]
5 Hb_002400_270 0.0949344 - - PREDICTED: probable sucrose-phosphate synthase 1 isoform X1 [Jatropha curcas]
6 Hb_000491_080 0.1020446696 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
7 Hb_001433_170 0.1027361809 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
8 Hb_000161_030 0.1038969171 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
9 Hb_007447_010 0.1045874649 - - PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]
10 Hb_004993_010 0.1054457642 - - PREDICTED: uncharacterized protein LOC104889591 [Beta vulgaris subsp. vulgaris]
11 Hb_002681_140 0.1077334831 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
12 Hb_001040_170 0.1083803141 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_002818_040 0.1134402538 - - tRNA synthetase-related family protein [Populus trichocarpa]
14 Hb_000015_010 0.1149194293 - - -
15 Hb_000005_050 0.1156338297 - - PREDICTED: uncharacterized protein LOC105627993 [Jatropha curcas]
16 Hb_000599_120 0.1160044092 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
17 Hb_001001_160 0.1170453389 - - Phosphatidic acid phosphohydrolase 2 isoform 1 [Theobroma cacao]
18 Hb_000284_200 0.1174472444 - - -
19 Hb_006091_030 0.1176218738 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
20 Hb_011496_010 0.1188243642 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001416_040 Hb_001416_040 Hb_006816_290 Hb_006816_290 Hb_001416_040--Hb_006816_290 Hb_000327_240 Hb_000327_240 Hb_001416_040--Hb_000327_240 Hb_000984_180 Hb_000984_180 Hb_001416_040--Hb_000984_180 Hb_002400_270 Hb_002400_270 Hb_001416_040--Hb_002400_270 Hb_000491_080 Hb_000491_080 Hb_001416_040--Hb_000491_080 Hb_001433_170 Hb_001433_170 Hb_001416_040--Hb_001433_170 Hb_006816_290--Hb_000327_240 Hb_006816_290--Hb_002400_270 Hb_002111_050 Hb_002111_050 Hb_006816_290--Hb_002111_050 Hb_001001_160 Hb_001001_160 Hb_006816_290--Hb_001001_160 Hb_007447_010 Hb_007447_010 Hb_006816_290--Hb_007447_010 Hb_000327_240--Hb_002400_270 Hb_001040_170 Hb_001040_170 Hb_000327_240--Hb_001040_170 Hb_000284_200 Hb_000284_200 Hb_000327_240--Hb_000284_200 Hb_000327_240--Hb_000984_180 Hb_000599_120 Hb_000599_120 Hb_000984_180--Hb_000599_120 Hb_000078_130 Hb_000078_130 Hb_000984_180--Hb_000078_130 Hb_000057_060 Hb_000057_060 Hb_000984_180--Hb_000057_060 Hb_000984_180--Hb_001433_170 Hb_005288_120 Hb_005288_120 Hb_000984_180--Hb_005288_120 Hb_011316_110 Hb_011316_110 Hb_002400_270--Hb_011316_110 Hb_000742_250 Hb_000742_250 Hb_002400_270--Hb_000742_250 Hb_002818_040 Hb_002818_040 Hb_002400_270--Hb_002818_040 Hb_000369_060 Hb_000369_060 Hb_002400_270--Hb_000369_060 Hb_160818_010 Hb_160818_010 Hb_000491_080--Hb_160818_010 Hb_011316_030 Hb_011316_030 Hb_000491_080--Hb_011316_030 Hb_001776_080 Hb_001776_080 Hb_000491_080--Hb_001776_080 Hb_002377_050 Hb_002377_050 Hb_000491_080--Hb_002377_050 Hb_000491_080--Hb_002818_040 Hb_006029_010 Hb_006029_010 Hb_000491_080--Hb_006029_010 Hb_001433_170--Hb_000057_060 Hb_127979_010 Hb_127979_010 Hb_001433_170--Hb_127979_010 Hb_000179_250 Hb_000179_250 Hb_001433_170--Hb_000179_250 Hb_000176_140 Hb_000176_140 Hb_001433_170--Hb_000176_140 Hb_026048_090 Hb_026048_090 Hb_001433_170--Hb_026048_090 Hb_011609_190 Hb_011609_190 Hb_001433_170--Hb_011609_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.3751 12.6236 9.55308 2.65935 85.5456 75.3339
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.4111 25.191 46.8369 9.51128 14.0803

CAGE analysis