Hb_000491_080

Information

Type -
Description -
Location Contig491: 139164-143346
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa008708mg
description hypothetical protein
nr
ID XP_012079765.1
description PREDICTED: F-box protein SKIP31 [Jatropha curcas]
swissprot
ID Q9FHK0
description F-box protein SKIP31 OS=Arabidopsis thaliana GN=SKIP31 PE=1 SV=1
trembl
ID A0A067KI94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15381 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45301: 139030-165254
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000491_080 0.0 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
2 Hb_160818_010 0.0668538937 - - -
3 Hb_011316_030 0.0746254643 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
4 Hb_001776_080 0.0829966581 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
5 Hb_002377_050 0.0832216435 - - Agmatine deiminase, putative [Ricinus communis]
6 Hb_002818_040 0.0854084427 - - tRNA synthetase-related family protein [Populus trichocarpa]
7 Hb_006029_010 0.085968441 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
8 Hb_000161_030 0.0876164204 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
9 Hb_011609_190 0.0880847576 - - 14-3-3 protein 2 [Hevea brasiliensis]
10 Hb_002044_090 0.0947777146 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
11 Hb_005314_010 0.0954531303 - - nucleotide binding protein, putative [Ricinus communis]
12 Hb_011496_010 0.0958924428 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
13 Hb_002169_010 0.0963000929 - - PREDICTED: la-related protein 6B [Jatropha curcas]
14 Hb_029281_010 0.0972849926 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
15 Hb_000573_040 0.0982180116 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
16 Hb_000176_140 0.0984442671 - - PREDICTED: bystin [Jatropha curcas]
17 Hb_000088_180 0.0988666293 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
18 Hb_001433_170 0.098877398 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
19 Hb_007786_010 0.0990584613 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
20 Hb_000015_010 0.0997820132 - - -

Gene co-expression network

sample Hb_000491_080 Hb_000491_080 Hb_160818_010 Hb_160818_010 Hb_000491_080--Hb_160818_010 Hb_011316_030 Hb_011316_030 Hb_000491_080--Hb_011316_030 Hb_001776_080 Hb_001776_080 Hb_000491_080--Hb_001776_080 Hb_002377_050 Hb_002377_050 Hb_000491_080--Hb_002377_050 Hb_002818_040 Hb_002818_040 Hb_000491_080--Hb_002818_040 Hb_006029_010 Hb_006029_010 Hb_000491_080--Hb_006029_010 Hb_002169_010 Hb_002169_010 Hb_160818_010--Hb_002169_010 Hb_160818_010--Hb_001776_080 Hb_000320_440 Hb_000320_440 Hb_160818_010--Hb_000320_440 Hb_011496_010 Hb_011496_010 Hb_160818_010--Hb_011496_010 Hb_005314_010 Hb_005314_010 Hb_160818_010--Hb_005314_010 Hb_003777_220 Hb_003777_220 Hb_011316_030--Hb_003777_220 Hb_000176_140 Hb_000176_140 Hb_011316_030--Hb_000176_140 Hb_000179_250 Hb_000179_250 Hb_011316_030--Hb_000179_250 Hb_011316_030--Hb_001776_080 Hb_127979_010 Hb_127979_010 Hb_011316_030--Hb_127979_010 Hb_001776_080--Hb_000176_140 Hb_001776_080--Hb_000320_440 Hb_002149_040 Hb_002149_040 Hb_001776_080--Hb_002149_040 Hb_001776_080--Hb_000179_250 Hb_002377_050--Hb_002169_010 Hb_002377_050--Hb_000176_140 Hb_002377_050--Hb_001776_080 Hb_001433_170 Hb_001433_170 Hb_002377_050--Hb_001433_170 Hb_002377_050--Hb_127979_010 Hb_000340_510 Hb_000340_510 Hb_002818_040--Hb_000340_510 Hb_000462_150 Hb_000462_150 Hb_002818_040--Hb_000462_150 Hb_003384_030 Hb_003384_030 Hb_002818_040--Hb_003384_030 Hb_000001_180 Hb_000001_180 Hb_002818_040--Hb_000001_180 Hb_002818_040--Hb_005314_010 Hb_005914_230 Hb_005914_230 Hb_002818_040--Hb_005914_230 Hb_000161_030 Hb_000161_030 Hb_006029_010--Hb_000161_030 Hb_004156_060 Hb_004156_060 Hb_006029_010--Hb_004156_060 Hb_007786_010 Hb_007786_010 Hb_006029_010--Hb_007786_010 Hb_182026_010 Hb_182026_010 Hb_006029_010--Hb_182026_010 Hb_000733_060 Hb_000733_060 Hb_006029_010--Hb_000733_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
366.222 73.595 32.2318 19.009 414.708 303.435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
176.771 88.1977 188.334 65.6652 28.1078

CAGE analysis