Hb_003777_220

Information

Type transcription factor
Description TF Family: SET
Location Contig3777: 291459-294805
Sequence    

Annotation

kegg
ID tcc:TCM_035633
description SET domain protein, putative isoform 1
nr
ID XP_012080731.1
description PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Jatropha curcas]
swissprot
ID Q3ECY6
description Protein SET DOMAIN GROUP 41 OS=Arabidopsis thaliana GN=SDG41 PE=2 SV=1
trembl
ID A0A061FI80
description SET domain protein, putative isoform 1 OS=Theobroma cacao GN=TCM_035633 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38455: 291622-295288
cDNA
(Sanger)
(ID:Location)		 032_J22.ab1: 291624-292135 , 032_K08.ab1: 291624-291841

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_220 0.0 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Jatropha curcas]
2 Hb_011316_030 0.0663172898 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
3 Hb_003734_130 0.0735413118 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
4 Hb_000320_440 0.0755052849 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
5 Hb_000176_140 0.0910033956 - - PREDICTED: bystin [Jatropha curcas]
6 Hb_000684_180 0.091753164 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
7 Hb_012807_120 0.0939310959 - - metal ion binding protein, putative [Ricinus communis]
8 Hb_001776_080 0.0943465729 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
9 Hb_012654_020 0.0956843599 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000085_280 0.0965126062 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
11 Hb_000179_250 0.099262489 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
12 Hb_000491_080 0.0998896969 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
13 Hb_001433_170 0.1008815445 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
14 Hb_160818_010 0.1016324824 - - -
15 Hb_001846_080 0.1022622852 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
16 Hb_006478_070 0.1049303473 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
17 Hb_019613_020 0.1066960354 - - phospholipase C, putative [Ricinus communis]
18 Hb_127979_010 0.1070356831 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
19 Hb_002391_110 0.1078297861 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
20 Hb_000573_040 0.1092292287 - - hypothetical protein JCGZ_19524 [Jatropha curcas]

Gene co-expression network

sample Hb_003777_220 Hb_003777_220 Hb_011316_030 Hb_011316_030 Hb_003777_220--Hb_011316_030 Hb_003734_130 Hb_003734_130 Hb_003777_220--Hb_003734_130 Hb_000320_440 Hb_000320_440 Hb_003777_220--Hb_000320_440 Hb_000176_140 Hb_000176_140 Hb_003777_220--Hb_000176_140 Hb_000684_180 Hb_000684_180 Hb_003777_220--Hb_000684_180 Hb_012807_120 Hb_012807_120 Hb_003777_220--Hb_012807_120 Hb_011316_030--Hb_000176_140 Hb_000491_080 Hb_000491_080 Hb_011316_030--Hb_000491_080 Hb_000179_250 Hb_000179_250 Hb_011316_030--Hb_000179_250 Hb_001776_080 Hb_001776_080 Hb_011316_030--Hb_001776_080 Hb_127979_010 Hb_127979_010 Hb_011316_030--Hb_127979_010 Hb_002675_190 Hb_002675_190 Hb_003734_130--Hb_002675_190 Hb_003734_130--Hb_011316_030 Hb_160818_010 Hb_160818_010 Hb_003734_130--Hb_160818_010 Hb_000573_040 Hb_000573_040 Hb_003734_130--Hb_000573_040 Hb_001439_180 Hb_001439_180 Hb_003734_130--Hb_001439_180 Hb_000320_440--Hb_001776_080 Hb_000088_180 Hb_000088_180 Hb_000320_440--Hb_000088_180 Hb_000172_530 Hb_000172_530 Hb_000320_440--Hb_000172_530 Hb_000260_700 Hb_000260_700 Hb_000320_440--Hb_000260_700 Hb_009615_110 Hb_009615_110 Hb_000320_440--Hb_009615_110 Hb_000176_140--Hb_127979_010 Hb_000176_140--Hb_000179_250 Hb_000176_140--Hb_001776_080 Hb_002044_090 Hb_002044_090 Hb_000176_140--Hb_002044_090 Hb_002681_140 Hb_002681_140 Hb_000176_140--Hb_002681_140 Hb_000684_180--Hb_000573_040 Hb_000631_150 Hb_000631_150 Hb_000684_180--Hb_000631_150 Hb_003352_050 Hb_003352_050 Hb_000684_180--Hb_003352_050 Hb_000134_360 Hb_000134_360 Hb_000684_180--Hb_000134_360 Hb_011644_020 Hb_011644_020 Hb_000684_180--Hb_011644_020 Hb_001195_030 Hb_001195_030 Hb_000684_180--Hb_001195_030 Hb_006478_070 Hb_006478_070 Hb_012807_120--Hb_006478_070 Hb_001140_080 Hb_001140_080 Hb_012807_120--Hb_001140_080 Hb_000365_350 Hb_000365_350 Hb_012807_120--Hb_000365_350 Hb_012807_120--Hb_000320_440 Hb_012807_120--Hb_000088_180 Hb_012807_120--Hb_000573_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.535 6.43739 1.80116 1.89745 50.593 54.7409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.8269 9.81285 20.2503 8.39539 3.50441

CAGE analysis