Hb_002675_190

Information

Type -
Description -
Location Contig2675: 163922-173798
Sequence    

Annotation

kegg
ID rcu:RCOM_0894930
description ATP-dependent transporter, putative (EC:3.6.3.28)
nr
ID AIU41643.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9M1H3
description ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1
trembl
ID A0A097P9R9
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCF4 PE=2 SV=1
Gene Ontology
ID GO:0005524
description abc transporter f family member 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002675_190 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_000331_480 0.0716248593 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
3 Hb_004931_040 0.0719263336 - - splicing factor-related family protein [Populus trichocarpa]
4 Hb_003734_130 0.0733861212 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
5 Hb_001439_180 0.0768280907 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
6 Hb_001034_020 0.0769217481 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
7 Hb_000212_280 0.0899005363 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
8 Hb_117950_020 0.0906740937 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
9 Hb_000573_040 0.0912342605 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
10 Hb_001431_070 0.0916272109 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
11 Hb_160818_010 0.0926237181 - - -
12 Hb_000413_130 0.0983654348 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
13 Hb_113216_010 0.0994267263 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
14 Hb_001357_190 0.103491457 - - ribonuclease III, putative [Ricinus communis]
15 Hb_029281_010 0.1040402108 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
16 Hb_025048_040 0.1044366851 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
17 Hb_012760_200 0.1045368756 - - protein phsophatase-2a, putative [Ricinus communis]
18 Hb_002169_010 0.1068060639 - - PREDICTED: la-related protein 6B [Jatropha curcas]
19 Hb_006901_040 0.1082789399 - - conserved hypothetical protein [Ricinus communis]
20 Hb_153547_010 0.1084342798 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]

Gene co-expression network

sample Hb_002675_190 Hb_002675_190 Hb_000331_480 Hb_000331_480 Hb_002675_190--Hb_000331_480 Hb_004931_040 Hb_004931_040 Hb_002675_190--Hb_004931_040 Hb_003734_130 Hb_003734_130 Hb_002675_190--Hb_003734_130 Hb_001439_180 Hb_001439_180 Hb_002675_190--Hb_001439_180 Hb_001034_020 Hb_001034_020 Hb_002675_190--Hb_001034_020 Hb_000212_280 Hb_000212_280 Hb_002675_190--Hb_000212_280 Hb_000331_480--Hb_001034_020 Hb_025048_040 Hb_025048_040 Hb_000331_480--Hb_025048_040 Hb_000331_480--Hb_000212_280 Hb_012760_200 Hb_012760_200 Hb_000331_480--Hb_012760_200 Hb_153547_010 Hb_153547_010 Hb_000331_480--Hb_153547_010 Hb_004931_040--Hb_001439_180 Hb_160818_010 Hb_160818_010 Hb_004931_040--Hb_160818_010 Hb_000953_140 Hb_000953_140 Hb_004931_040--Hb_000953_140 Hb_004931_040--Hb_000331_480 Hb_004931_040--Hb_001034_020 Hb_003777_220 Hb_003777_220 Hb_003734_130--Hb_003777_220 Hb_011316_030 Hb_011316_030 Hb_003734_130--Hb_011316_030 Hb_003734_130--Hb_160818_010 Hb_000573_040 Hb_000573_040 Hb_003734_130--Hb_000573_040 Hb_003734_130--Hb_001439_180 Hb_000076_290 Hb_000076_290 Hb_001439_180--Hb_000076_290 Hb_001439_180--Hb_001034_020 Hb_029281_010 Hb_029281_010 Hb_001439_180--Hb_029281_010 Hb_001439_180--Hb_000331_480 Hb_060437_010 Hb_060437_010 Hb_001034_020--Hb_060437_010 Hb_001034_020--Hb_012760_200 Hb_004032_350 Hb_004032_350 Hb_001034_020--Hb_004032_350 Hb_000212_280--Hb_025048_040 Hb_113216_010 Hb_113216_010 Hb_000212_280--Hb_113216_010 Hb_002374_150 Hb_002374_150 Hb_000212_280--Hb_002374_150 Hb_005000_270 Hb_005000_270 Hb_000212_280--Hb_005000_270 Hb_005028_010 Hb_005028_010 Hb_000212_280--Hb_005028_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.9864 23.7106 3.44301 5.70813 90.3894 93.668
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.8958 12.9422 36.2263 25.0854 3.37096

CAGE analysis