Hb_004931_040

Information

Type -
Description -
Location Contig4931: 25193-29700
Sequence    

Annotation

kegg
ID pop:POPTR_0012s12440g
description POPTRDRAFT_772815; splicing factor-related family protein
nr
ID XP_002318579.1
description splicing factor-related family protein [Populus trichocarpa]
swissprot
ID Q9SHY8
description Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis thaliana GN=At1g65660 PE=1 SV=2
trembl
ID B9I2T5
description Splicing factor-related family protein OS=Populus trichocarpa GN=POPTR_0012s12440g PE=4 SV=1
Gene Ontology
ID GO:0003676
description pre-mrna-splicing factor slu7-a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45363: 24994-29721
cDNA
(Sanger)
(ID:Location)		 018_D17.ab1: 25090-26379 , 045_M24.ab1: 28037-29721 , 053_I03.ab1: 28163-29720

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004931_040 0.0 - - splicing factor-related family protein [Populus trichocarpa]
2 Hb_002675_190 0.0719263336 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_001439_180 0.0812710852 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
4 Hb_160818_010 0.0820878299 - - -
5 Hb_000953_140 0.0875434856 transcription factor TF Family: Trihelix Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
6 Hb_000331_480 0.0950000307 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
7 Hb_001034_020 0.0957221237 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
8 Hb_117950_020 0.0986959703 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
9 Hb_029281_010 0.0996257405 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
10 Hb_000491_080 0.1013346345 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
11 Hb_000413_130 0.1035754599 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
12 Hb_003734_130 0.1070959007 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
13 Hb_005314_010 0.1109170806 - - nucleotide binding protein, putative [Ricinus communis]
14 Hb_002169_010 0.1116329088 - - PREDICTED: la-related protein 6B [Jatropha curcas]
15 Hb_000076_290 0.1125022681 - - translation factor sui1, putative [Ricinus communis]
16 Hb_001776_080 0.1127796479 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
17 Hb_011671_330 0.1129321756 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 4 [Jatropha curcas]
18 Hb_002377_050 0.1136024451 - - Agmatine deiminase, putative [Ricinus communis]
19 Hb_153547_010 0.114286896 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
20 Hb_002149_040 0.1146279062 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004931_040 Hb_004931_040 Hb_002675_190 Hb_002675_190 Hb_004931_040--Hb_002675_190 Hb_001439_180 Hb_001439_180 Hb_004931_040--Hb_001439_180 Hb_160818_010 Hb_160818_010 Hb_004931_040--Hb_160818_010 Hb_000953_140 Hb_000953_140 Hb_004931_040--Hb_000953_140 Hb_000331_480 Hb_000331_480 Hb_004931_040--Hb_000331_480 Hb_001034_020 Hb_001034_020 Hb_004931_040--Hb_001034_020 Hb_002675_190--Hb_000331_480 Hb_003734_130 Hb_003734_130 Hb_002675_190--Hb_003734_130 Hb_002675_190--Hb_001439_180 Hb_002675_190--Hb_001034_020 Hb_000212_280 Hb_000212_280 Hb_002675_190--Hb_000212_280 Hb_000076_290 Hb_000076_290 Hb_001439_180--Hb_000076_290 Hb_001439_180--Hb_001034_020 Hb_029281_010 Hb_029281_010 Hb_001439_180--Hb_029281_010 Hb_001439_180--Hb_000331_480 Hb_000491_080 Hb_000491_080 Hb_160818_010--Hb_000491_080 Hb_002169_010 Hb_002169_010 Hb_160818_010--Hb_002169_010 Hb_001776_080 Hb_001776_080 Hb_160818_010--Hb_001776_080 Hb_000320_440 Hb_000320_440 Hb_160818_010--Hb_000320_440 Hb_011496_010 Hb_011496_010 Hb_160818_010--Hb_011496_010 Hb_005314_010 Hb_005314_010 Hb_160818_010--Hb_005314_010 Hb_000926_270 Hb_000926_270 Hb_000953_140--Hb_000926_270 Hb_000953_140--Hb_160818_010 Hb_000953_140--Hb_001776_080 Hb_002149_040 Hb_002149_040 Hb_000953_140--Hb_002149_040 Hb_003050_090 Hb_003050_090 Hb_000953_140--Hb_003050_090 Hb_000331_480--Hb_001034_020 Hb_025048_040 Hb_025048_040 Hb_000331_480--Hb_025048_040 Hb_000331_480--Hb_000212_280 Hb_012760_200 Hb_012760_200 Hb_000331_480--Hb_012760_200 Hb_153547_010 Hb_153547_010 Hb_000331_480--Hb_153547_010 Hb_060437_010 Hb_060437_010 Hb_001034_020--Hb_060437_010 Hb_001034_020--Hb_012760_200 Hb_004032_350 Hb_004032_350 Hb_001034_020--Hb_004032_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1488.78 500.934 34.7353 56.0484 1666.06 1226.73
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
640.912 262.252 630.686 452.69 77.8099

CAGE analysis