Hb_004032_350

Information

Type -
Description -
Location Contig4032: 335363-336205
Sequence    

Annotation

kegg
ID mus:103971024
description splicing factor U2af small subunit B-like isoform X1
nr
ID XP_009383223.1
description PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
swissprot
ID Q9S709
description Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1
trembl
ID B9H5X4
description U2 snRNP auxiliary factor small subunit family protein OS=Populus trichocarpa GN=POPTR_0005s27940g PE=4 SV=1
Gene Ontology
ID GO:0005634
description splicing factor u2af small subunit b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40045: 335162-336593
cDNA
(Sanger)
(ID:Location)		 001_G05.ab1: 335180-335950 , 007_K13.ab1: 335182-335915 , 024_H23.ab1: 335162-335389 , 030_E06.ab1: 335162-335605 , 048_C02.ab1: 335162-335893

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_350 0.0 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
2 Hb_000076_290 0.0664188001 - - translation factor sui1, putative [Ricinus communis]
3 Hb_012760_200 0.0714352745 - - protein phsophatase-2a, putative [Ricinus communis]
4 Hb_000152_890 0.0716465772 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
5 Hb_000367_290 0.0725078505 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
6 Hb_013753_010 0.0725757424 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
7 Hb_001034_020 0.0740233721 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
8 Hb_000322_170 0.0780871988 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
9 Hb_000172_550 0.0790322686 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
10 Hb_000291_120 0.0813039985 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
11 Hb_000174_200 0.0819164973 - - PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
12 Hb_000331_480 0.0820829415 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
13 Hb_002025_140 0.0838062415 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
14 Hb_005314_010 0.0843885827 - - nucleotide binding protein, putative [Ricinus communis]
15 Hb_000640_210 0.085507693 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
16 Hb_000327_310 0.0862062799 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
17 Hb_000573_040 0.0871966773 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
18 Hb_153547_010 0.0873790633 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
19 Hb_004531_090 0.0874497427 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
20 Hb_000212_280 0.0876241789 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]

Gene co-expression network

sample Hb_004032_350 Hb_004032_350 Hb_000076_290 Hb_000076_290 Hb_004032_350--Hb_000076_290 Hb_012760_200 Hb_012760_200 Hb_004032_350--Hb_012760_200 Hb_000152_890 Hb_000152_890 Hb_004032_350--Hb_000152_890 Hb_000367_290 Hb_000367_290 Hb_004032_350--Hb_000367_290 Hb_013753_010 Hb_013753_010 Hb_004032_350--Hb_013753_010 Hb_001034_020 Hb_001034_020 Hb_004032_350--Hb_001034_020 Hb_000174_200 Hb_000174_200 Hb_000076_290--Hb_000174_200 Hb_000640_210 Hb_000640_210 Hb_000076_290--Hb_000640_210 Hb_001439_180 Hb_001439_180 Hb_000076_290--Hb_001439_180 Hb_015401_020 Hb_015401_020 Hb_000076_290--Hb_015401_020 Hb_002270_010 Hb_002270_010 Hb_000076_290--Hb_002270_010 Hb_005028_010 Hb_005028_010 Hb_012760_200--Hb_005028_010 Hb_012760_200--Hb_001034_020 Hb_012760_200--Hb_013753_010 Hb_000212_280 Hb_000212_280 Hb_012760_200--Hb_000212_280 Hb_000331_480 Hb_000331_480 Hb_012760_200--Hb_000331_480 Hb_000152_890--Hb_000367_290 Hb_004724_360 Hb_004724_360 Hb_000152_890--Hb_004724_360 Hb_000001_180 Hb_000001_180 Hb_000152_890--Hb_000001_180 Hb_005314_010 Hb_005314_010 Hb_000152_890--Hb_005314_010 Hb_002133_030 Hb_002133_030 Hb_000152_890--Hb_002133_030 Hb_000116_280 Hb_000116_280 Hb_000367_290--Hb_000116_280 Hb_005295_040 Hb_005295_040 Hb_000367_290--Hb_005295_040 Hb_001975_020 Hb_001975_020 Hb_000367_290--Hb_001975_020 Hb_000413_130 Hb_000413_130 Hb_000367_290--Hb_000413_130 Hb_000890_220 Hb_000890_220 Hb_013753_010--Hb_000890_220 Hb_101151_020 Hb_101151_020 Hb_013753_010--Hb_101151_020 Hb_013753_010--Hb_000331_480 Hb_025048_040 Hb_025048_040 Hb_013753_010--Hb_025048_040 Hb_060437_010 Hb_060437_010 Hb_001034_020--Hb_060437_010 Hb_001034_020--Hb_000331_480 Hb_001034_020--Hb_001439_180 Hb_002675_190 Hb_002675_190 Hb_001034_020--Hb_002675_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
921.688 432.748 73.251 90.0846 968.801 948.814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
349.048 200.568 280.588 158.26 96.7386

CAGE analysis