Hb_000152_890

Information

Type -
Description -
Location Contig152: 704091-707453
Sequence    

Annotation

kegg
ID rcu:RCOM_1500660
description pentatricopeptide repeat-containing protein, putative
nr
ID KDP22434.1
description hypothetical protein JCGZ_26265 [Jatropha curcas]
swissprot
ID Q9FMF6
description Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1
trembl
ID A0A067JSA9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26265 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13063: 705352-705689 , PASA_asmbl_13064: 704968-705314 , PASA_asmbl_13065: 703369-704088 , PASA_asmbl_13069: 704196-704827
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_890 0.0 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
2 Hb_000367_290 0.0564069188 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
3 Hb_004032_350 0.0716465772 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
4 Hb_004724_360 0.0739330396 - - OTU-like cysteine protease family protein [Populus trichocarpa]
5 Hb_000001_180 0.0790750459 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
6 Hb_005314_010 0.0839578516 - - nucleotide binding protein, putative [Ricinus communis]
7 Hb_002133_030 0.0854872376 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
8 Hb_005295_040 0.0875877195 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
9 Hb_011457_110 0.0879020224 - - PREDICTED: protein NETWORKED 1D [Jatropha curcas]
10 Hb_017168_010 0.0892270909 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000327_310 0.090206898 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
12 Hb_001498_030 0.0915051433 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
13 Hb_000291_120 0.0918655225 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
14 Hb_004678_020 0.0925784657 - - PREDICTED: protein YIF1B [Jatropha curcas]
15 Hb_000413_130 0.0928723003 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
16 Hb_005399_020 0.0929795417 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
17 Hb_000116_280 0.0935638595 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
18 Hb_001975_020 0.0939404519 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
19 Hb_009421_030 0.0956976684 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
20 Hb_002818_040 0.0965615105 - - tRNA synthetase-related family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000152_890 Hb_000152_890 Hb_000367_290 Hb_000367_290 Hb_000152_890--Hb_000367_290 Hb_004032_350 Hb_004032_350 Hb_000152_890--Hb_004032_350 Hb_004724_360 Hb_004724_360 Hb_000152_890--Hb_004724_360 Hb_000001_180 Hb_000001_180 Hb_000152_890--Hb_000001_180 Hb_005314_010 Hb_005314_010 Hb_000152_890--Hb_005314_010 Hb_002133_030 Hb_002133_030 Hb_000152_890--Hb_002133_030 Hb_000116_280 Hb_000116_280 Hb_000367_290--Hb_000116_280 Hb_005295_040 Hb_005295_040 Hb_000367_290--Hb_005295_040 Hb_000367_290--Hb_004032_350 Hb_001975_020 Hb_001975_020 Hb_000367_290--Hb_001975_020 Hb_000413_130 Hb_000413_130 Hb_000367_290--Hb_000413_130 Hb_000076_290 Hb_000076_290 Hb_004032_350--Hb_000076_290 Hb_012760_200 Hb_012760_200 Hb_004032_350--Hb_012760_200 Hb_013753_010 Hb_013753_010 Hb_004032_350--Hb_013753_010 Hb_001034_020 Hb_001034_020 Hb_004032_350--Hb_001034_020 Hb_000076_080 Hb_000076_080 Hb_004724_360--Hb_000076_080 Hb_000327_310 Hb_000327_310 Hb_004724_360--Hb_000327_310 Hb_001504_160 Hb_001504_160 Hb_004724_360--Hb_001504_160 Hb_000684_420 Hb_000684_420 Hb_004724_360--Hb_000684_420 Hb_004724_360--Hb_000001_180 Hb_004724_360--Hb_005295_040 Hb_003384_030 Hb_003384_030 Hb_000001_180--Hb_003384_030 Hb_002818_040 Hb_002818_040 Hb_000001_180--Hb_002818_040 Hb_005914_230 Hb_005914_230 Hb_000001_180--Hb_005914_230 Hb_000001_180--Hb_005314_010 Hb_004678_020 Hb_004678_020 Hb_000001_180--Hb_004678_020 Hb_005314_010--Hb_002818_040 Hb_005314_010--Hb_000413_130 Hb_024399_010 Hb_024399_010 Hb_005314_010--Hb_024399_010 Hb_005314_010--Hb_005914_230 Hb_029281_010 Hb_029281_010 Hb_005314_010--Hb_029281_010 Hb_023020_060 Hb_023020_060 Hb_002133_030--Hb_023020_060 Hb_001498_030 Hb_001498_030 Hb_002133_030--Hb_001498_030 Hb_003125_060 Hb_003125_060 Hb_002133_030--Hb_003125_060 Hb_002133_030--Hb_004724_360 Hb_002133_030--Hb_000327_310 Hb_000343_210 Hb_000343_210 Hb_002133_030--Hb_000343_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.17565 3.79418 0.782249 1.06858 9.37761 7.41814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.28237 2.43071 3.33491 1.50136 0.957844

CAGE analysis