Hb_023020_060

Information

Type -
Description -
Location Contig23020: 32144-42047
Sequence    

Annotation

kegg
ID rcu:RCOM_1272580
description ubiquitin-conjugating enzyme e2S, putative (EC:6.3.2.19)
nr
ID XP_002523681.1
description ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
swissprot
ID Q9FF66
description Ubiquitin-conjugating enzyme E2 22 OS=Arabidopsis thaliana GN=UBC22 PE=1 SV=1
trembl
ID B9SCG2
description Ubiquitin-conjugating enzyme e2S, putative OS=Ricinus communis GN=RCOM_1272580 PE=3 SV=1
Gene Ontology
ID GO:0016874
description ubiquitin-conjugating enzyme e2 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24190: 32217-42174 , PASA_asmbl_24191: 32429-32670 , PASA_asmbl_24193: 36851-37130
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023020_060 0.0 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
2 Hb_002133_030 0.0534077011 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
3 Hb_000640_020 0.0561018679 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
4 Hb_000343_210 0.0651636031 - - ran-binding protein, putative [Ricinus communis]
5 Hb_001396_290 0.073825606 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
6 Hb_003020_110 0.0789251478 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
7 Hb_000504_160 0.0796213814 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
8 Hb_001616_090 0.0805341628 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
9 Hb_073171_080 0.0812725117 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
10 Hb_001474_030 0.0823552857 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
11 Hb_000331_190 0.0824365488 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
12 Hb_004374_150 0.0832156629 - - PREDICTED: uncharacterized protein LOC105650290 isoform X1 [Jatropha curcas]
13 Hb_003125_060 0.0842282374 - - PREDICTED: snurportin-1 [Jatropha curcas]
14 Hb_000849_100 0.085316006 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
15 Hb_006002_030 0.0853354885 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
16 Hb_000104_080 0.0856336886 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
17 Hb_000120_510 0.0857550112 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
18 Hb_009913_050 0.0858176941 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
19 Hb_000331_160 0.0858503068 - - adenylate kinase 1 chloroplast, putative [Ricinus communis]
20 Hb_000236_280 0.0866560628 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_023020_060 Hb_023020_060 Hb_002133_030 Hb_002133_030 Hb_023020_060--Hb_002133_030 Hb_000640_020 Hb_000640_020 Hb_023020_060--Hb_000640_020 Hb_000343_210 Hb_000343_210 Hb_023020_060--Hb_000343_210 Hb_001396_290 Hb_001396_290 Hb_023020_060--Hb_001396_290 Hb_003020_110 Hb_003020_110 Hb_023020_060--Hb_003020_110 Hb_000504_160 Hb_000504_160 Hb_023020_060--Hb_000504_160 Hb_001498_030 Hb_001498_030 Hb_002133_030--Hb_001498_030 Hb_003125_060 Hb_003125_060 Hb_002133_030--Hb_003125_060 Hb_004724_360 Hb_004724_360 Hb_002133_030--Hb_004724_360 Hb_000327_310 Hb_000327_310 Hb_002133_030--Hb_000327_310 Hb_002133_030--Hb_000343_210 Hb_001894_030 Hb_001894_030 Hb_000640_020--Hb_001894_030 Hb_000640_020--Hb_000343_210 Hb_000640_020--Hb_000504_160 Hb_000104_080 Hb_000104_080 Hb_000640_020--Hb_000104_080 Hb_028707_090 Hb_028707_090 Hb_000640_020--Hb_028707_090 Hb_147737_010 Hb_147737_010 Hb_000343_210--Hb_147737_010 Hb_002675_040 Hb_002675_040 Hb_000343_210--Hb_002675_040 Hb_000035_040 Hb_000035_040 Hb_000343_210--Hb_000035_040 Hb_000331_190 Hb_000331_190 Hb_000343_210--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_000343_210--Hb_000531_090 Hb_000343_210--Hb_003020_110 Hb_000120_510 Hb_000120_510 Hb_001396_290--Hb_000120_510 Hb_004225_130 Hb_004225_130 Hb_001396_290--Hb_004225_130 Hb_002048_090 Hb_002048_090 Hb_001396_290--Hb_002048_090 Hb_001396_290--Hb_000504_160 Hb_006829_090 Hb_006829_090 Hb_001396_290--Hb_006829_090 Hb_073171_080 Hb_073171_080 Hb_001396_290--Hb_073171_080 Hb_164010_060 Hb_164010_060 Hb_003020_110--Hb_164010_060 Hb_000342_110 Hb_000342_110 Hb_003020_110--Hb_000342_110 Hb_003581_120 Hb_003581_120 Hb_003020_110--Hb_003581_120 Hb_002400_180 Hb_002400_180 Hb_003020_110--Hb_002400_180 Hb_031042_070 Hb_031042_070 Hb_003020_110--Hb_031042_070 Hb_002659_060 Hb_002659_060 Hb_000504_160--Hb_002659_060 Hb_000504_160--Hb_000343_210 Hb_001946_300 Hb_001946_300 Hb_000504_160--Hb_001946_300 Hb_000504_160--Hb_006829_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
250.38 117.019 59.0566 60.6744 248.719 219.642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
102.156 70.9753 54.1431 74.8384 29.0604

CAGE analysis