Hb_000504_160

Information

Type -
Description -
Location Contig504: 182313-200771
Sequence    

Annotation

kegg
ID pop:POPTR_0001s35340g
description hypothetical protein
nr
ID XP_006369932.1
description hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
swissprot
ID Q5VU65
description Nuclear pore membrane glycoprotein 210-like OS=Homo sapiens GN=NUP210L PE=2 SV=1
trembl
ID U5GVC8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s35340g PE=4 SV=1
Gene Ontology
ID GO:0000166
description nuclear pore complex protein gp210

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45950: 167744-188880 , PASA_asmbl_45952: 198857-212107
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000504_160 0.0 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
2 Hb_002659_060 0.0642784832 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
3 Hb_001396_290 0.0700982384 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
4 Hb_000343_210 0.0705505556 - - ran-binding protein, putative [Ricinus communis]
5 Hb_001946_300 0.075013453 - - PREDICTED: F-box protein At-B [Jatropha curcas]
6 Hb_000640_020 0.0752995338 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
7 Hb_006829_090 0.0783980884 - - PREDICTED: protein MOS2 [Jatropha curcas]
8 Hb_001946_240 0.0794685713 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
9 Hb_023020_060 0.0796213814 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
10 Hb_000186_260 0.079699811 transcription factor TF Family: PHD PREDICTED: protein polybromo-1-like [Jatropha curcas]
11 Hb_002675_040 0.0830978202 - - ran-binding protein, putative [Ricinus communis]
12 Hb_000098_130 0.0855782957 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
13 Hb_000120_510 0.0859872846 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
14 Hb_001474_030 0.0860061404 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
15 Hb_000331_160 0.0869990186 - - adenylate kinase 1 chloroplast, putative [Ricinus communis]
16 Hb_008518_050 0.0885810006 - - hypothetical protein F383_31148 [Gossypium arboreum]
17 Hb_000313_340 0.0910448838 - - DNA repair protein xp-E, putative [Ricinus communis]
18 Hb_017895_020 0.091186521 - - Vacuolar protein sorting protein, putative [Ricinus communis]
19 Hb_002301_270 0.0914694371 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
20 Hb_004899_070 0.0921664608 - - PREDICTED: RRP12-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000504_160 Hb_000504_160 Hb_002659_060 Hb_002659_060 Hb_000504_160--Hb_002659_060 Hb_001396_290 Hb_001396_290 Hb_000504_160--Hb_001396_290 Hb_000343_210 Hb_000343_210 Hb_000504_160--Hb_000343_210 Hb_001946_300 Hb_001946_300 Hb_000504_160--Hb_001946_300 Hb_000640_020 Hb_000640_020 Hb_000504_160--Hb_000640_020 Hb_006829_090 Hb_006829_090 Hb_000504_160--Hb_006829_090 Hb_000120_610 Hb_000120_610 Hb_002659_060--Hb_000120_610 Hb_000594_020 Hb_000594_020 Hb_002659_060--Hb_000594_020 Hb_004920_130 Hb_004920_130 Hb_002659_060--Hb_004920_130 Hb_033883_060 Hb_033883_060 Hb_002659_060--Hb_033883_060 Hb_004635_050 Hb_004635_050 Hb_002659_060--Hb_004635_050 Hb_000120_510 Hb_000120_510 Hb_001396_290--Hb_000120_510 Hb_004225_130 Hb_004225_130 Hb_001396_290--Hb_004225_130 Hb_002048_090 Hb_002048_090 Hb_001396_290--Hb_002048_090 Hb_001396_290--Hb_006829_090 Hb_073171_080 Hb_073171_080 Hb_001396_290--Hb_073171_080 Hb_147737_010 Hb_147737_010 Hb_000343_210--Hb_147737_010 Hb_002675_040 Hb_002675_040 Hb_000343_210--Hb_002675_040 Hb_000035_040 Hb_000035_040 Hb_000343_210--Hb_000035_040 Hb_000331_190 Hb_000331_190 Hb_000343_210--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_000343_210--Hb_000531_090 Hb_003020_110 Hb_003020_110 Hb_000343_210--Hb_003020_110 Hb_000363_130 Hb_000363_130 Hb_001946_300--Hb_000363_130 Hb_000313_340 Hb_000313_340 Hb_001946_300--Hb_000313_340 Hb_140049_020 Hb_140049_020 Hb_001946_300--Hb_140049_020 Hb_001946_300--Hb_147737_010 Hb_032202_240 Hb_032202_240 Hb_001946_300--Hb_032202_240 Hb_023020_060 Hb_023020_060 Hb_000640_020--Hb_023020_060 Hb_001894_030 Hb_001894_030 Hb_000640_020--Hb_001894_030 Hb_000640_020--Hb_000343_210 Hb_000104_080 Hb_000104_080 Hb_000640_020--Hb_000104_080 Hb_028707_090 Hb_028707_090 Hb_000640_020--Hb_028707_090 Hb_078477_040 Hb_078477_040 Hb_006829_090--Hb_078477_040 Hb_006002_030 Hb_006002_030 Hb_006829_090--Hb_006002_030 Hb_006829_090--Hb_000120_510 Hb_002133_030 Hb_002133_030 Hb_006829_090--Hb_002133_030 Hb_005462_020 Hb_005462_020 Hb_006829_090--Hb_005462_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3083 9.83821 4.08401 3.38127 14.163 12.0773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.21391 3.66605 2.18581 4.09714 3.13738

CAGE analysis