Hb_078477_040

Information

Type -
Description -
Location Contig78477: 14528-18140
Sequence    

Annotation

kegg
ID rcu:RCOM_1579230
description nuclear movement protein nudc, putative
nr
ID XP_002513546.1
description nuclear movement protein nudc, putative [Ricinus communis]
swissprot
ID Q9STN7
description Protein BOBBER 2 OS=Arabidopsis thaliana GN=BOB2 PE=2 SV=1
trembl
ID B9RIH7
description Nuclear movement protein nudc, putative OS=Ricinus communis GN=RCOM_1579230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58058: 14652-18390
cDNA
(Sanger)
(ID:Location)		 003_E07.ab1: 14661-17197 , 016_D09.ab1: 14661-17122

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078477_040 0.0 - - nuclear movement protein nudc, putative [Ricinus communis]
2 Hb_006002_030 0.0392487611 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
3 Hb_005462_020 0.0569343446 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
4 Hb_006829_090 0.0601475018 - - PREDICTED: protein MOS2 [Jatropha curcas]
5 Hb_001278_060 0.0677290968 - - nucleotide binding protein, putative [Ricinus communis]
6 Hb_001489_070 0.0708655799 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
7 Hb_022250_110 0.0718409264 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
8 Hb_031069_020 0.0756973134 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
9 Hb_000213_070 0.0774530409 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]
10 Hb_001901_080 0.0787655652 - - PREDICTED: xylose isomerase [Jatropha curcas]
11 Hb_003018_160 0.080221491 - - PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]
12 Hb_006882_010 0.081348506 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]
13 Hb_004920_060 0.0838302078 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
14 Hb_001731_020 0.0847648348 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
15 Hb_006588_050 0.0850029882 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
16 Hb_004970_160 0.091681046 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
17 Hb_000120_510 0.0917696993 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
18 Hb_000313_340 0.0918784099 - - DNA repair protein xp-E, putative [Ricinus communis]
19 Hb_002235_320 0.0925277612 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
20 Hb_000261_290 0.092850878 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]

Gene co-expression network

sample Hb_078477_040 Hb_078477_040 Hb_006002_030 Hb_006002_030 Hb_078477_040--Hb_006002_030 Hb_005462_020 Hb_005462_020 Hb_078477_040--Hb_005462_020 Hb_006829_090 Hb_006829_090 Hb_078477_040--Hb_006829_090 Hb_001278_060 Hb_001278_060 Hb_078477_040--Hb_001278_060 Hb_001489_070 Hb_001489_070 Hb_078477_040--Hb_001489_070 Hb_022250_110 Hb_022250_110 Hb_078477_040--Hb_022250_110 Hb_006002_030--Hb_001278_060 Hb_006002_030--Hb_006829_090 Hb_000213_070 Hb_000213_070 Hb_006002_030--Hb_000213_070 Hb_003018_160 Hb_003018_160 Hb_006002_030--Hb_003018_160 Hb_002235_320 Hb_002235_320 Hb_006002_030--Hb_002235_320 Hb_004970_160 Hb_004970_160 Hb_005462_020--Hb_004970_160 Hb_005462_020--Hb_006829_090 Hb_005462_020--Hb_006002_030 Hb_005462_020--Hb_022250_110 Hb_000120_620 Hb_000120_620 Hb_005462_020--Hb_000120_620 Hb_000120_510 Hb_000120_510 Hb_006829_090--Hb_000120_510 Hb_001396_290 Hb_001396_290 Hb_006829_090--Hb_001396_290 Hb_002133_030 Hb_002133_030 Hb_006829_090--Hb_002133_030 Hb_007668_020 Hb_007668_020 Hb_001278_060--Hb_007668_020 Hb_001278_060--Hb_000213_070 Hb_005129_050 Hb_005129_050 Hb_001278_060--Hb_005129_050 Hb_001433_190 Hb_001433_190 Hb_001278_060--Hb_001433_190 Hb_001731_020 Hb_001731_020 Hb_001489_070--Hb_001731_020 Hb_001489_070--Hb_006002_030 Hb_001489_070--Hb_005462_020 Hb_004920_060 Hb_004920_060 Hb_001489_070--Hb_004920_060 Hb_008725_130 Hb_008725_130 Hb_001489_070--Hb_008725_130 Hb_000329_490 Hb_000329_490 Hb_022250_110--Hb_000329_490 Hb_000209_070 Hb_000209_070 Hb_022250_110--Hb_000209_070 Hb_000029_320 Hb_000029_320 Hb_022250_110--Hb_000029_320 Hb_022250_110--Hb_003018_160 Hb_022250_110--Hb_006002_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
223.806 138.74 66.4329 68.1556 321.023 301.05
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
67.1751 39.5187 56.1604 88.8534 51.7997

CAGE analysis