Hb_002235_320

Information

Type -
Description -
Location Contig2235: 266969-285556
Sequence    

Annotation

kegg
ID pop:POPTR_0004s12210g
description hypothetical protein
nr
ID XP_012084720.1
description PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
swissprot
ID Q9MAC5
description Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis thaliana GN=PTB PE=1 SV=1
trembl
ID A0A067K5U1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19863 PE=4 SV=1
Gene Ontology
ID GO:0000932
description polypyrimidine tract-binding protein homolog 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23248: 269820-270330 , PASA_asmbl_23249: 270969-271181 , PASA_asmbl_23251: 267042-285568
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_320 0.0 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
2 Hb_004225_130 0.0534600747 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105628060 isoform X1 [Jatropha curcas]
3 Hb_002883_010 0.0693806026 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
4 Hb_000239_070 0.0725203551 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
5 Hb_006002_030 0.0736838922 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
6 Hb_007416_310 0.0737774796 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
7 Hb_001019_170 0.0766241834 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
8 Hb_000003_790 0.0768540984 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
9 Hb_000331_190 0.0769880833 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
10 Hb_000424_010 0.077374039 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
11 Hb_002652_040 0.0777485777 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
12 Hb_002820_040 0.079007312 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000594_020 0.0793167328 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
14 Hb_000849_100 0.0793195581 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
15 Hb_003581_120 0.0815368633 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
16 Hb_010180_040 0.0826440821 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]
17 Hb_006913_040 0.0830929489 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
18 Hb_002411_120 0.0835001326 - - PREDICTED: uncharacterized protein LOC105631645 [Jatropha curcas]
19 Hb_001396_290 0.0838600678 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
20 Hb_000213_070 0.0859460289 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002235_320 Hb_002235_320 Hb_004225_130 Hb_004225_130 Hb_002235_320--Hb_004225_130 Hb_002883_010 Hb_002883_010 Hb_002235_320--Hb_002883_010 Hb_000239_070 Hb_000239_070 Hb_002235_320--Hb_000239_070 Hb_006002_030 Hb_006002_030 Hb_002235_320--Hb_006002_030 Hb_007416_310 Hb_007416_310 Hb_002235_320--Hb_007416_310 Hb_001019_170 Hb_001019_170 Hb_002235_320--Hb_001019_170 Hb_001396_290 Hb_001396_290 Hb_004225_130--Hb_001396_290 Hb_002048_090 Hb_002048_090 Hb_004225_130--Hb_002048_090 Hb_004225_130--Hb_006002_030 Hb_004225_130--Hb_000239_070 Hb_002411_120 Hb_002411_120 Hb_004225_130--Hb_002411_120 Hb_001437_100 Hb_001437_100 Hb_002883_010--Hb_001437_100 Hb_002043_170 Hb_002043_170 Hb_002883_010--Hb_002043_170 Hb_000317_440 Hb_000317_440 Hb_002883_010--Hb_000317_440 Hb_031754_010 Hb_031754_010 Hb_002883_010--Hb_031754_010 Hb_002652_040 Hb_002652_040 Hb_002883_010--Hb_002652_040 Hb_002883_010--Hb_000239_070 Hb_000340_160 Hb_000340_160 Hb_000239_070--Hb_000340_160 Hb_000227_380 Hb_000227_380 Hb_000239_070--Hb_000227_380 Hb_000331_190 Hb_000331_190 Hb_000239_070--Hb_000331_190 Hb_175338_020 Hb_175338_020 Hb_000239_070--Hb_175338_020 Hb_078477_040 Hb_078477_040 Hb_006002_030--Hb_078477_040 Hb_001278_060 Hb_001278_060 Hb_006002_030--Hb_001278_060 Hb_006829_090 Hb_006829_090 Hb_006002_030--Hb_006829_090 Hb_000213_070 Hb_000213_070 Hb_006002_030--Hb_000213_070 Hb_003018_160 Hb_003018_160 Hb_006002_030--Hb_003018_160 Hb_002820_040 Hb_002820_040 Hb_007416_310--Hb_002820_040 Hb_007416_310--Hb_001019_170 Hb_007416_310--Hb_002652_040 Hb_002725_070 Hb_002725_070 Hb_007416_310--Hb_002725_070 Hb_007416_310--Hb_000331_190 Hb_008714_020 Hb_008714_020 Hb_001019_170--Hb_008714_020 Hb_008695_120 Hb_008695_120 Hb_001019_170--Hb_008695_120 Hb_003581_120 Hb_003581_120 Hb_001019_170--Hb_003581_120 Hb_002400_180 Hb_002400_180 Hb_001019_170--Hb_002400_180 Hb_000076_080 Hb_000076_080 Hb_001019_170--Hb_000076_080 Hb_006913_040 Hb_006913_040 Hb_001019_170--Hb_006913_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.6543 37.5811 16.5775 16.6298 74.4125 81.3366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.7161 16.1923 18.5938 23.3108 11.8874

CAGE analysis