Hb_003018_160

Information

Type -
Description -
Location Contig3018: 74983-79665
Sequence    

Annotation

kegg
ID rcu:RCOM_0017370
description hypothetical protein
nr
ID XP_012065749.1
description PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]
swissprot
ID Q66JG8
description RNA demethylase ALKBH5 OS=Xenopus tropicalis GN=alkbh5 PE=2 SV=1
trembl
ID A0A067LPE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06523 PE=4 SV=1
Gene Ontology
ID GO:0016706
description 2-oxoglutarate and fe -dependent oxygenase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31766: 73688-74367 , PASA_asmbl_31767: 75012-79550 , PASA_asmbl_31768: 76781-77182 , PASA_asmbl_31769: 76661-76777
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003018_160 0.0 - - PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]
2 Hb_011497_010 0.0495519923 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
3 Hb_001575_080 0.0595560511 - - PREDICTED: villin-4-like [Jatropha curcas]
4 Hb_006816_300 0.0602852783 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
5 Hb_000116_280 0.0637160687 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
6 Hb_002493_090 0.0686227779 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
7 Hb_001975_020 0.0721703736 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
8 Hb_006002_030 0.0726928393 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
9 Hb_022250_110 0.0727768496 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
10 Hb_007849_020 0.0771658698 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
11 Hb_078477_040 0.080221491 - - nuclear movement protein nudc, putative [Ricinus communis]
12 Hb_000046_450 0.0804289638 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
13 Hb_002105_080 0.0836651902 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
14 Hb_031754_010 0.0851328789 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
15 Hb_046615_020 0.0852816315 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
16 Hb_005295_040 0.0861894648 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
17 Hb_002133_030 0.087699427 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
18 Hb_000250_070 0.0878903485 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
19 Hb_147737_010 0.0880660596 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
20 Hb_000244_240 0.0885279011 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003018_160 Hb_003018_160 Hb_011497_010 Hb_011497_010 Hb_003018_160--Hb_011497_010 Hb_001575_080 Hb_001575_080 Hb_003018_160--Hb_001575_080 Hb_006816_300 Hb_006816_300 Hb_003018_160--Hb_006816_300 Hb_000116_280 Hb_000116_280 Hb_003018_160--Hb_000116_280 Hb_002493_090 Hb_002493_090 Hb_003018_160--Hb_002493_090 Hb_001975_020 Hb_001975_020 Hb_003018_160--Hb_001975_020 Hb_003716_020 Hb_003716_020 Hb_011497_010--Hb_003716_020 Hb_011497_010--Hb_001575_080 Hb_002159_040 Hb_002159_040 Hb_011497_010--Hb_002159_040 Hb_000244_240 Hb_000244_240 Hb_011497_010--Hb_000244_240 Hb_011497_010--Hb_000116_280 Hb_001575_080--Hb_000116_280 Hb_175338_020 Hb_175338_020 Hb_001575_080--Hb_175338_020 Hb_003847_120 Hb_003847_120 Hb_001575_080--Hb_003847_120 Hb_000906_060 Hb_000906_060 Hb_001575_080--Hb_000906_060 Hb_007849_020 Hb_007849_020 Hb_006816_300--Hb_007849_020 Hb_002105_080 Hb_002105_080 Hb_006816_300--Hb_002105_080 Hb_000046_450 Hb_000046_450 Hb_006816_300--Hb_000046_450 Hb_000227_380 Hb_000227_380 Hb_006816_300--Hb_000227_380 Hb_000250_070 Hb_000250_070 Hb_006816_300--Hb_000250_070 Hb_005399_020 Hb_005399_020 Hb_000116_280--Hb_005399_020 Hb_000367_290 Hb_000367_290 Hb_000116_280--Hb_000367_290 Hb_000116_280--Hb_001975_020 Hb_000116_280--Hb_006816_300 Hb_000116_280--Hb_002105_080 Hb_004143_070 Hb_004143_070 Hb_002493_090--Hb_004143_070 Hb_002493_090--Hb_001975_020 Hb_000335_010 Hb_000335_010 Hb_002493_090--Hb_000335_010 Hb_031754_010 Hb_031754_010 Hb_002493_090--Hb_031754_010 Hb_000849_100 Hb_000849_100 Hb_002493_090--Hb_000849_100 Hb_000327_310 Hb_000327_310 Hb_001975_020--Hb_000327_310 Hb_046615_020 Hb_046615_020 Hb_001975_020--Hb_046615_020 Hb_001975_020--Hb_031754_010 Hb_005295_040 Hb_005295_040 Hb_001975_020--Hb_005295_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
95.8543 55.0491 20.4354 35.4341 111.932 125.057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.1882 19.0613 42.7951 31.7904 21.5837

CAGE analysis