Hb_000367_290

Information

Type -
Description -
Location Contig367: 236022-241752
Sequence    

Annotation

kegg
ID rcu:RCOM_1470750
description hypothetical protein
nr
ID XP_012080328.1
description PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K8H7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11679 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37760: 236074-241673 , PASA_asmbl_37761: 239698-240068
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000367_290 0.0 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
2 Hb_000152_890 0.0564069188 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
3 Hb_000116_280 0.0693153554 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
4 Hb_005295_040 0.0701644509 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
5 Hb_004032_350 0.0725078505 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
6 Hb_001975_020 0.0759002877 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
7 Hb_000413_130 0.0773341134 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
8 Hb_005399_020 0.0844929829 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
9 Hb_005314_010 0.0850350095 - - nucleotide binding protein, putative [Ricinus communis]
10 Hb_001431_070 0.0863672845 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
11 Hb_004724_360 0.0903988987 - - OTU-like cysteine protease family protein [Populus trichocarpa]
12 Hb_000327_310 0.0906164709 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
13 Hb_042083_070 0.0906529518 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
14 Hb_001498_030 0.09165173 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
15 Hb_001034_020 0.0931031184 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
16 Hb_000735_120 0.0938014253 - - PREDICTED: pentatricopeptide repeat-containing protein At3g25210, mitochondrial [Jatropha curcas]
17 Hb_009421_030 0.0946377226 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
18 Hb_000076_290 0.0947803243 - - translation factor sui1, putative [Ricinus communis]
19 Hb_000001_180 0.0961083595 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
20 Hb_002133_030 0.0968384979 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000367_290 Hb_000367_290 Hb_000152_890 Hb_000152_890 Hb_000367_290--Hb_000152_890 Hb_000116_280 Hb_000116_280 Hb_000367_290--Hb_000116_280 Hb_005295_040 Hb_005295_040 Hb_000367_290--Hb_005295_040 Hb_004032_350 Hb_004032_350 Hb_000367_290--Hb_004032_350 Hb_001975_020 Hb_001975_020 Hb_000367_290--Hb_001975_020 Hb_000413_130 Hb_000413_130 Hb_000367_290--Hb_000413_130 Hb_000152_890--Hb_004032_350 Hb_004724_360 Hb_004724_360 Hb_000152_890--Hb_004724_360 Hb_000001_180 Hb_000001_180 Hb_000152_890--Hb_000001_180 Hb_005314_010 Hb_005314_010 Hb_000152_890--Hb_005314_010 Hb_002133_030 Hb_002133_030 Hb_000152_890--Hb_002133_030 Hb_005399_020 Hb_005399_020 Hb_000116_280--Hb_005399_020 Hb_003018_160 Hb_003018_160 Hb_000116_280--Hb_003018_160 Hb_000116_280--Hb_001975_020 Hb_006816_300 Hb_006816_300 Hb_000116_280--Hb_006816_300 Hb_002105_080 Hb_002105_080 Hb_000116_280--Hb_002105_080 Hb_005295_040--Hb_004724_360 Hb_002725_070 Hb_002725_070 Hb_005295_040--Hb_002725_070 Hb_005295_040--Hb_001975_020 Hb_005635_010 Hb_005635_010 Hb_005295_040--Hb_005635_010 Hb_000327_310 Hb_000327_310 Hb_005295_040--Hb_000327_310 Hb_000076_290 Hb_000076_290 Hb_004032_350--Hb_000076_290 Hb_012760_200 Hb_012760_200 Hb_004032_350--Hb_012760_200 Hb_013753_010 Hb_013753_010 Hb_004032_350--Hb_013753_010 Hb_001034_020 Hb_001034_020 Hb_004032_350--Hb_001034_020 Hb_001975_020--Hb_000327_310 Hb_046615_020 Hb_046615_020 Hb_001975_020--Hb_046615_020 Hb_031754_010 Hb_031754_010 Hb_001975_020--Hb_031754_010 Hb_001975_020--Hb_003018_160 Hb_001431_070 Hb_001431_070 Hb_000413_130--Hb_001431_070 Hb_000413_130--Hb_005314_010 Hb_000413_130--Hb_002725_070 Hb_029281_010 Hb_029281_010 Hb_000413_130--Hb_029281_010 Hb_006091_030 Hb_006091_030 Hb_000413_130--Hb_006091_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
85.1012 43.1939 7.8421 14.2582 97.8812 90.7132
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.8988 17.2173 44.5748 18.6585 10.7504

CAGE analysis