Hb_005635_010

Information

Type -
Description -
Location Contig5635: 13616-43117
Sequence    

Annotation

kegg
ID rcu:RCOM_1176790
description Cleft lip and palate transmembrane protein, putative
nr
ID XP_012088378.1
description PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
swissprot
ID Q6DEL2
description Cleft lip and palate transmembrane protein 1 homolog OS=Danio rerio GN=clptm1 PE=2 SV=1
trembl
ID A0A067JXI2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25871 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cleft lip and palate transmembrane protein 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48957: 13699-43084 , PASA_asmbl_48958: 24497-24654
cDNA
(Sanger)
(ID:Location)		 031_B13.ab1: 13699-25095

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005635_010 0.0 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
2 Hb_000814_090 0.0658443424 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005295_040 0.0731754227 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
4 Hb_001040_160 0.0737081937 - - glutaredoxin, grx, putative [Ricinus communis]
5 Hb_002725_070 0.0786678256 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
6 Hb_003299_090 0.0808625818 - - hypothetical protein PRUPE_ppa011647mg [Prunus persica]
7 Hb_000078_100 0.0811470335 - - PREDICTED: topless-related protein 4-like isoform X2 [Jatropha curcas]
8 Hb_063047_010 0.0842226558 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
9 Hb_002341_030 0.0856576437 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]
10 Hb_000017_340 0.0871436995 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
11 Hb_000076_080 0.0875585342 - - PREDICTED: protein MOS2 [Jatropha curcas]
12 Hb_001019_170 0.0883839946 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
13 Hb_008714_020 0.0889640774 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
14 Hb_006913_040 0.0895800119 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
15 Hb_110364_010 0.0899801105 - - gamma-tubulin complex component, putative [Ricinus communis]
16 Hb_001582_030 0.0904639622 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
17 Hb_004881_050 0.0905203856 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
18 Hb_000136_150 0.091394642 - - hypothetical protein VITISV_038366 [Vitis vinifera]
19 Hb_000699_250 0.0942381388 - - Poly(rC)-binding protein, putative [Ricinus communis]
20 Hb_001431_070 0.0953178098 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005635_010 Hb_005635_010 Hb_000814_090 Hb_000814_090 Hb_005635_010--Hb_000814_090 Hb_005295_040 Hb_005295_040 Hb_005635_010--Hb_005295_040 Hb_001040_160 Hb_001040_160 Hb_005635_010--Hb_001040_160 Hb_002725_070 Hb_002725_070 Hb_005635_010--Hb_002725_070 Hb_003299_090 Hb_003299_090 Hb_005635_010--Hb_003299_090 Hb_000078_100 Hb_000078_100 Hb_005635_010--Hb_000078_100 Hb_000814_090--Hb_002725_070 Hb_006913_040 Hb_006913_040 Hb_000814_090--Hb_006913_040 Hb_001019_170 Hb_001019_170 Hb_000814_090--Hb_001019_170 Hb_000814_090--Hb_000078_100 Hb_002820_040 Hb_002820_040 Hb_000814_090--Hb_002820_040 Hb_004724_360 Hb_004724_360 Hb_005295_040--Hb_004724_360 Hb_005295_040--Hb_002725_070 Hb_001975_020 Hb_001975_020 Hb_005295_040--Hb_001975_020 Hb_000367_290 Hb_000367_290 Hb_005295_040--Hb_000367_290 Hb_000327_310 Hb_000327_310 Hb_005295_040--Hb_000327_310 Hb_000316_030 Hb_000316_030 Hb_001040_160--Hb_000316_030 Hb_008714_020 Hb_008714_020 Hb_001040_160--Hb_008714_020 Hb_001609_010 Hb_001609_010 Hb_001040_160--Hb_001609_010 Hb_063047_010 Hb_063047_010 Hb_001040_160--Hb_063047_010 Hb_025012_010 Hb_025012_010 Hb_001040_160--Hb_025012_010 Hb_042083_070 Hb_042083_070 Hb_002725_070--Hb_042083_070 Hb_002725_070--Hb_002820_040 Hb_002725_070--Hb_000078_100 Hb_117950_020 Hb_117950_020 Hb_002725_070--Hb_117950_020 Hb_005914_090 Hb_005914_090 Hb_003299_090--Hb_005914_090 Hb_000347_150 Hb_000347_150 Hb_003299_090--Hb_000347_150 Hb_001307_140 Hb_001307_140 Hb_003299_090--Hb_001307_140 Hb_000270_020 Hb_000270_020 Hb_003299_090--Hb_000270_020 Hb_012016_020 Hb_012016_020 Hb_003299_090--Hb_012016_020 Hb_000078_100--Hb_117950_020 Hb_000078_100--Hb_002820_040 Hb_004608_020 Hb_004608_020 Hb_000078_100--Hb_004608_020 Hb_000631_150 Hb_000631_150 Hb_000078_100--Hb_000631_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
226.72 126.388 32.2494 68.4485 263.591 419.264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
128.913 71.6892 119.457 122.777 29.9068

CAGE analysis