Hb_001609_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1609: 10215-14224
Sequence    

Annotation

kegg
ID rcu:RCOM_0455860
description hypothetical protein
nr
ID XP_012065200.1
description PREDICTED: putative inactive disease susceptibility protein LOV1 [Jatropha curcas]
swissprot
ID P0C8S1
description Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=3 SV=1
trembl
ID A0A067LI10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20874 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance rpp13-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14402: 10273-14201
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001609_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative inactive disease susceptibility protein LOV1 [Jatropha curcas]
2 Hb_063047_010 0.0630951068 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
3 Hb_001040_160 0.0704867607 - - glutaredoxin, grx, putative [Ricinus communis]
4 Hb_000316_030 0.0716723958 - - zinc finger protein, putative [Ricinus communis]
5 Hb_001871_040 0.0799054103 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
6 Hb_004881_050 0.08026843 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
7 Hb_000457_060 0.0832117255 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
8 Hb_000136_150 0.0868854355 - - hypothetical protein VITISV_038366 [Vitis vinifera]
9 Hb_000370_030 0.0885745165 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
10 Hb_001943_010 0.0902747384 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
11 Hb_003363_010 0.0914358217 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000390_060 0.0923256097 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
13 Hb_000046_450 0.0923769077 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
14 Hb_002716_140 0.0962925556 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
15 Hb_000915_050 0.0965719016 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000335_010 0.0966807527 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_000184_130 0.0973159402 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
18 Hb_004452_100 0.0981980149 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
19 Hb_003711_040 0.0984741706 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
20 Hb_005635_010 0.0988935982 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001609_010 Hb_001609_010 Hb_063047_010 Hb_063047_010 Hb_001609_010--Hb_063047_010 Hb_001040_160 Hb_001040_160 Hb_001609_010--Hb_001040_160 Hb_000316_030 Hb_000316_030 Hb_001609_010--Hb_000316_030 Hb_001871_040 Hb_001871_040 Hb_001609_010--Hb_001871_040 Hb_004881_050 Hb_004881_050 Hb_001609_010--Hb_004881_050 Hb_000457_060 Hb_000457_060 Hb_001609_010--Hb_000457_060 Hb_063047_010--Hb_001040_160 Hb_063047_010--Hb_001871_040 Hb_063047_010--Hb_000316_030 Hb_110364_010 Hb_110364_010 Hb_063047_010--Hb_110364_010 Hb_063047_010--Hb_004881_050 Hb_001040_160--Hb_000316_030 Hb_008714_020 Hb_008714_020 Hb_001040_160--Hb_008714_020 Hb_005635_010 Hb_005635_010 Hb_001040_160--Hb_005635_010 Hb_025012_010 Hb_025012_010 Hb_001040_160--Hb_025012_010 Hb_003434_060 Hb_003434_060 Hb_000316_030--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_000316_030--Hb_000390_060 Hb_002097_090 Hb_002097_090 Hb_000316_030--Hb_002097_090 Hb_123777_030 Hb_123777_030 Hb_001871_040--Hb_123777_030 Hb_004055_040 Hb_004055_040 Hb_001871_040--Hb_004055_040 Hb_004096_020 Hb_004096_020 Hb_001871_040--Hb_004096_020 Hb_003406_040 Hb_003406_040 Hb_001871_040--Hb_003406_040 Hb_002928_060 Hb_002928_060 Hb_001871_040--Hb_002928_060 Hb_079326_010 Hb_079326_010 Hb_004881_050--Hb_079326_010 Hb_004881_050--Hb_000457_060 Hb_000372_040 Hb_000372_040 Hb_004881_050--Hb_000372_040 Hb_004881_050--Hb_003434_060 Hb_002811_120 Hb_002811_120 Hb_004881_050--Hb_002811_120 Hb_000335_010 Hb_000335_010 Hb_000457_060--Hb_000335_010 Hb_000370_030 Hb_000370_030 Hb_000457_060--Hb_000370_030 Hb_004608_020 Hb_004608_020 Hb_000457_060--Hb_004608_020 Hb_000789_080 Hb_000789_080 Hb_000457_060--Hb_000789_080 Hb_000631_150 Hb_000631_150 Hb_000457_060--Hb_000631_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
73.3195 27.2718 7.18057 21.0398 55.2774 106.686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.4888 16.647 34.5761 22.854 19.8828

CAGE analysis