Hb_002928_060

Information

Type -
Description -
Location Contig2928: 25980-34103
Sequence    

Annotation

kegg
ID rcu:RCOM_1600880
description ribosome biogenesis protein tsr1, putative
nr
ID XP_012073669.1
description PREDICTED: pre-rRNA-processing protein TSR1 homolog [Jatropha curcas]
swissprot
ID Q5SWD9
description Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus GN=Tsr1 PE=2 SV=1
trembl
ID A0A067KX18
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08096 PE=4 SV=1
Gene Ontology
ID GO:0005634
description pre-rrna-processing protein tsr1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30684: 25982-34014
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002928_060 0.0 - - PREDICTED: pre-rRNA-processing protein TSR1 homolog [Jatropha curcas]
2 Hb_004055_040 0.0490106271 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
3 Hb_005730_030 0.0682448462 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
4 Hb_002874_070 0.0745250341 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
5 Hb_000230_330 0.074860893 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
6 Hb_001871_040 0.0772876902 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
7 Hb_003362_040 0.0791082853 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
8 Hb_001584_110 0.0792749683 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
9 Hb_000462_150 0.0798137236 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
10 Hb_001504_160 0.0805006889 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
11 Hb_000915_050 0.0805600832 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001019_170 0.0822549527 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
13 Hb_001366_040 0.0822628173 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
14 Hb_042083_070 0.0834779887 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
15 Hb_140171_010 0.0844363507 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
16 Hb_004096_020 0.0852634745 - - PREDICTED: KH domain-containing protein At4g18375-like, partial [Fragaria vesca subsp. vesca]
17 Hb_004204_080 0.0854928058 - - diacylglycerol kinase, theta, putative [Ricinus communis]
18 Hb_000173_400 0.0855952053 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]
19 Hb_002341_030 0.0868806467 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]
20 Hb_022408_010 0.0870895482 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]

Gene co-expression network

sample Hb_002928_060 Hb_002928_060 Hb_004055_040 Hb_004055_040 Hb_002928_060--Hb_004055_040 Hb_005730_030 Hb_005730_030 Hb_002928_060--Hb_005730_030 Hb_002874_070 Hb_002874_070 Hb_002928_060--Hb_002874_070 Hb_000230_330 Hb_000230_330 Hb_002928_060--Hb_000230_330 Hb_001871_040 Hb_001871_040 Hb_002928_060--Hb_001871_040 Hb_003362_040 Hb_003362_040 Hb_002928_060--Hb_003362_040 Hb_004055_040--Hb_005730_030 Hb_001366_040 Hb_001366_040 Hb_004055_040--Hb_001366_040 Hb_004055_040--Hb_001871_040 Hb_000244_250 Hb_000244_250 Hb_004055_040--Hb_000244_250 Hb_000915_050 Hb_000915_050 Hb_004055_040--Hb_000915_050 Hb_140171_010 Hb_140171_010 Hb_005730_030--Hb_140171_010 Hb_005730_030--Hb_000244_250 Hb_022408_010 Hb_022408_010 Hb_005730_030--Hb_022408_010 Hb_004204_080 Hb_004204_080 Hb_005730_030--Hb_004204_080 Hb_001584_110 Hb_001584_110 Hb_002874_070--Hb_001584_110 Hb_004440_100 Hb_004440_100 Hb_002874_070--Hb_004440_100 Hb_185467_020 Hb_185467_020 Hb_002874_070--Hb_185467_020 Hb_022256_040 Hb_022256_040 Hb_002874_070--Hb_022256_040 Hb_001936_050 Hb_001936_050 Hb_002874_070--Hb_001936_050 Hb_000230_330--Hb_001584_110 Hb_000390_060 Hb_000390_060 Hb_000230_330--Hb_000390_060 Hb_001504_160 Hb_001504_160 Hb_000230_330--Hb_001504_160 Hb_000462_150 Hb_000462_150 Hb_000230_330--Hb_000462_150 Hb_003434_060 Hb_003434_060 Hb_000230_330--Hb_003434_060 Hb_000076_080 Hb_000076_080 Hb_000230_330--Hb_000076_080 Hb_123777_030 Hb_123777_030 Hb_001871_040--Hb_123777_030 Hb_004096_020 Hb_004096_020 Hb_001871_040--Hb_004096_020 Hb_063047_010 Hb_063047_010 Hb_001871_040--Hb_063047_010 Hb_003406_040 Hb_003406_040 Hb_001871_040--Hb_003406_040 Hb_003362_040--Hb_000915_050 Hb_002200_130 Hb_002200_130 Hb_003362_040--Hb_002200_130 Hb_003362_040--Hb_000244_250 Hb_007188_070 Hb_007188_070 Hb_003362_040--Hb_007188_070 Hb_009627_010 Hb_009627_010 Hb_003362_040--Hb_009627_010 Hb_000034_050 Hb_000034_050 Hb_003362_040--Hb_000034_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.4043 33.2162 17.0487 17.1162 64.819 89.5177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.6127 19.1992 52.9112 22.3137 11.0719

CAGE analysis