Hb_123777_030

Information

Type transcription factor
Description TF Family: SNF2
Location Contig123777: 9490-24244
Sequence    

Annotation

kegg
ID pop:POPTR_0016s04280g
description POPTRDRAFT_576236; transcriptional activator family protein
nr
ID XP_012086222.1
description PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
swissprot
ID Q8RXS6
description DNA helicase INO80 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2
trembl
ID A0A067JQ54
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21124 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna helicase ino80 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07227: 9447-23292
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123777_030 0.0 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
2 Hb_003406_040 0.0478548018 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
3 Hb_001871_040 0.0540937562 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
4 Hb_000005_380 0.0578629679 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
5 Hb_007586_030 0.0635652103 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
6 Hb_000977_180 0.0647491338 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
7 Hb_004055_040 0.0669689803 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
8 Hb_004096_020 0.0740397956 - - PREDICTED: KH domain-containing protein At4g18375-like, partial [Fragaria vesca subsp. vesca]
9 Hb_000390_070 0.0790079557 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
10 Hb_002150_030 0.0792385847 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
11 Hb_000244_250 0.0798673447 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
12 Hb_004452_100 0.0824782997 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
13 Hb_001797_050 0.0835458245 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
14 Hb_006649_060 0.0850802607 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005977_090 0.0868416444 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
16 Hb_000627_080 0.087199277 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
17 Hb_007407_040 0.0877141222 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_022408_010 0.0878516847 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
19 Hb_000048_140 0.0884504229 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
20 Hb_001504_160 0.0892576406 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]

Gene co-expression network

sample Hb_123777_030 Hb_123777_030 Hb_003406_040 Hb_003406_040 Hb_123777_030--Hb_003406_040 Hb_001871_040 Hb_001871_040 Hb_123777_030--Hb_001871_040 Hb_000005_380 Hb_000005_380 Hb_123777_030--Hb_000005_380 Hb_007586_030 Hb_007586_030 Hb_123777_030--Hb_007586_030 Hb_000977_180 Hb_000977_180 Hb_123777_030--Hb_000977_180 Hb_004055_040 Hb_004055_040 Hb_123777_030--Hb_004055_040 Hb_004096_020 Hb_004096_020 Hb_003406_040--Hb_004096_020 Hb_003406_040--Hb_001871_040 Hb_003406_040--Hb_000005_380 Hb_002150_030 Hb_002150_030 Hb_003406_040--Hb_002150_030 Hb_007407_040 Hb_007407_040 Hb_003406_040--Hb_007407_040 Hb_001871_040--Hb_004055_040 Hb_001871_040--Hb_004096_020 Hb_063047_010 Hb_063047_010 Hb_001871_040--Hb_063047_010 Hb_002928_060 Hb_002928_060 Hb_001871_040--Hb_002928_060 Hb_000005_380--Hb_007586_030 Hb_000244_250 Hb_000244_250 Hb_000005_380--Hb_000244_250 Hb_011318_010 Hb_011318_010 Hb_000005_380--Hb_011318_010 Hb_005977_090 Hb_005977_090 Hb_000005_380--Hb_005977_090 Hb_000005_380--Hb_004055_040 Hb_007586_030--Hb_000244_250 Hb_007586_030--Hb_000977_180 Hb_006649_060 Hb_006649_060 Hb_007586_030--Hb_006649_060 Hb_007586_030--Hb_002150_030 Hb_000977_180--Hb_002150_030 Hb_005214_160 Hb_005214_160 Hb_000977_180--Hb_005214_160 Hb_000977_180--Hb_005977_090 Hb_007364_010 Hb_007364_010 Hb_000977_180--Hb_007364_010 Hb_004055_040--Hb_002928_060 Hb_005730_030 Hb_005730_030 Hb_004055_040--Hb_005730_030 Hb_001366_040 Hb_001366_040 Hb_004055_040--Hb_001366_040 Hb_004055_040--Hb_000244_250 Hb_000915_050 Hb_000915_050 Hb_004055_040--Hb_000915_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.7508 30.4053 10.5977 12.4287 66.2332 82.1534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.9902 18.7942 48.4644 24.7348 23.5456

CAGE analysis