Hb_000977_180

Information

Type -
Description -
Location Contig977: 158695-168516
Sequence    

Annotation

kegg
ID rcu:RCOM_1447980
description Splicing factor U2AF-associated protein, putative
nr
ID XP_012085826.1
description PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
swissprot
ID Q8BGC0
description HIV Tat-specific factor 1 homolog OS=Mus musculus GN=Htatsf1 PE=1 SV=1
trembl
ID A0A067K527
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18082 PE=4 SV=1
Gene Ontology
ID GO:0097159
description splicing factor u2af-associated protein 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64169: 164620-164734 , PASA_asmbl_64170: 164735-165343 , PASA_asmbl_64171: 165344-165921
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000977_180 0.0 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
2 Hb_007586_030 0.0622214279 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
3 Hb_002150_030 0.0647358033 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
4 Hb_123777_030 0.0647491338 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
5 Hb_005214_160 0.0725276885 - - PREDICTED: heat shock 70 kDa protein, mitochondrial [Jatropha curcas]
6 Hb_005977_090 0.0731499236 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
7 Hb_007364_010 0.0762670862 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X1 [Jatropha curcas]
8 Hb_001504_160 0.0781394732 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
9 Hb_009620_040 0.0803954499 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
10 Hb_006649_060 0.0819928006 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001736_040 0.0821214475 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
12 Hb_004452_100 0.0821421066 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
13 Hb_012654_010 0.0830015152 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
14 Hb_003506_080 0.0838546704 - - dipeptidyl peptidase IV, putative [Ricinus communis]
15 Hb_007108_030 0.0863045324 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_028487_110 0.086849294 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
17 Hb_002097_090 0.0871207639 - - Splicing factor 3A subunit, putative [Ricinus communis]
18 Hb_003406_040 0.0876444857 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
19 Hb_000005_380 0.0877480268 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
20 Hb_000076_080 0.0878554718 - - PREDICTED: protein MOS2 [Jatropha curcas]

Gene co-expression network

sample Hb_000977_180 Hb_000977_180 Hb_007586_030 Hb_007586_030 Hb_000977_180--Hb_007586_030 Hb_002150_030 Hb_002150_030 Hb_000977_180--Hb_002150_030 Hb_123777_030 Hb_123777_030 Hb_000977_180--Hb_123777_030 Hb_005214_160 Hb_005214_160 Hb_000977_180--Hb_005214_160 Hb_005977_090 Hb_005977_090 Hb_000977_180--Hb_005977_090 Hb_007364_010 Hb_007364_010 Hb_000977_180--Hb_007364_010 Hb_000005_380 Hb_000005_380 Hb_007586_030--Hb_000005_380 Hb_000244_250 Hb_000244_250 Hb_007586_030--Hb_000244_250 Hb_006649_060 Hb_006649_060 Hb_007586_030--Hb_006649_060 Hb_007586_030--Hb_123777_030 Hb_007586_030--Hb_002150_030 Hb_007108_030 Hb_007108_030 Hb_002150_030--Hb_007108_030 Hb_001797_050 Hb_001797_050 Hb_002150_030--Hb_001797_050 Hb_002150_030--Hb_006649_060 Hb_009411_010 Hb_009411_010 Hb_002150_030--Hb_009411_010 Hb_003406_040 Hb_003406_040 Hb_123777_030--Hb_003406_040 Hb_001871_040 Hb_001871_040 Hb_123777_030--Hb_001871_040 Hb_123777_030--Hb_000005_380 Hb_004055_040 Hb_004055_040 Hb_123777_030--Hb_004055_040 Hb_012654_010 Hb_012654_010 Hb_005214_160--Hb_012654_010 Hb_009620_040 Hb_009620_040 Hb_005214_160--Hb_009620_040 Hb_005214_160--Hb_007364_010 Hb_004567_100 Hb_004567_100 Hb_005214_160--Hb_004567_100 Hb_002097_090 Hb_002097_090 Hb_005214_160--Hb_002097_090 Hb_028487_110 Hb_028487_110 Hb_005977_090--Hb_028487_110 Hb_001638_250 Hb_001638_250 Hb_005977_090--Hb_001638_250 Hb_001866_110 Hb_001866_110 Hb_005977_090--Hb_001866_110 Hb_005977_090--Hb_007586_030 Hb_000803_300 Hb_000803_300 Hb_005977_090--Hb_000803_300 Hb_000522_090 Hb_000522_090 Hb_005977_090--Hb_000522_090 Hb_001789_210 Hb_001789_210 Hb_007364_010--Hb_001789_210 Hb_004934_090 Hb_004934_090 Hb_007364_010--Hb_004934_090 Hb_000703_080 Hb_000703_080 Hb_007364_010--Hb_000703_080 Hb_010710_110 Hb_010710_110 Hb_007364_010--Hb_010710_110 Hb_025557_010 Hb_025557_010 Hb_007364_010--Hb_025557_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.69807 4.80603 1.26462 2.26525 11.8151 11.6652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.26187 4.40498 6.18756 4.54052 3.76238

CAGE analysis