Hb_003406_040

Information

Type -
Description -
Location Contig3406: 45231-63415
Sequence    

Annotation

kegg
ID rcu:RCOM_0943710
description ATP-dependent RNA helicase, putative
nr
ID XP_012075913.1
description PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
swissprot
ID Q8VHK9
description ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=1 SV=2
trembl
ID A0A067KI18
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11961 PE=4 SV=1
Gene Ontology
ID GO:0003676
description atp-dependent rna helicase dhx36

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35624: 51582-53161 , PASA_asmbl_35625: 53512-57117 , PASA_asmbl_35626: 63181-64012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003406_040 0.0 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
2 Hb_123777_030 0.0478548018 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
3 Hb_004096_020 0.0731793401 - - PREDICTED: KH domain-containing protein At4g18375-like, partial [Fragaria vesca subsp. vesca]
4 Hb_001871_040 0.074905322 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
5 Hb_000005_380 0.0826363705 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
6 Hb_002150_030 0.0864184363 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
7 Hb_007407_040 0.0869938261 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_006915_060 0.0871212962 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
9 Hb_000977_180 0.0876444857 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
10 Hb_000300_580 0.0896731696 - - PREDICTED: importin-5-like [Jatropha curcas]
11 Hb_007586_030 0.0910777698 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
12 Hb_005977_090 0.0925306987 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
13 Hb_007108_030 0.092614572 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000195_020 0.0929744832 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial [Jatropha curcas]
15 Hb_000048_140 0.0944040413 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
16 Hb_001437_100 0.0949445348 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
17 Hb_003052_150 0.0964722352 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
18 Hb_002863_040 0.0971174307 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
19 Hb_003544_100 0.098397254 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
20 Hb_001797_050 0.1003676413 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003406_040 Hb_003406_040 Hb_123777_030 Hb_123777_030 Hb_003406_040--Hb_123777_030 Hb_004096_020 Hb_004096_020 Hb_003406_040--Hb_004096_020 Hb_001871_040 Hb_001871_040 Hb_003406_040--Hb_001871_040 Hb_000005_380 Hb_000005_380 Hb_003406_040--Hb_000005_380 Hb_002150_030 Hb_002150_030 Hb_003406_040--Hb_002150_030 Hb_007407_040 Hb_007407_040 Hb_003406_040--Hb_007407_040 Hb_123777_030--Hb_001871_040 Hb_123777_030--Hb_000005_380 Hb_007586_030 Hb_007586_030 Hb_123777_030--Hb_007586_030 Hb_000977_180 Hb_000977_180 Hb_123777_030--Hb_000977_180 Hb_004055_040 Hb_004055_040 Hb_123777_030--Hb_004055_040 Hb_046615_020 Hb_046615_020 Hb_004096_020--Hb_046615_020 Hb_004096_020--Hb_001871_040 Hb_004096_020--Hb_123777_030 Hb_000195_020 Hb_000195_020 Hb_004096_020--Hb_000195_020 Hb_000357_080 Hb_000357_080 Hb_004096_020--Hb_000357_080 Hb_001871_040--Hb_004055_040 Hb_063047_010 Hb_063047_010 Hb_001871_040--Hb_063047_010 Hb_002928_060 Hb_002928_060 Hb_001871_040--Hb_002928_060 Hb_000005_380--Hb_007586_030 Hb_000244_250 Hb_000244_250 Hb_000005_380--Hb_000244_250 Hb_011318_010 Hb_011318_010 Hb_000005_380--Hb_011318_010 Hb_005977_090 Hb_005977_090 Hb_000005_380--Hb_005977_090 Hb_000005_380--Hb_004055_040 Hb_007108_030 Hb_007108_030 Hb_002150_030--Hb_007108_030 Hb_002150_030--Hb_007586_030 Hb_002150_030--Hb_000977_180 Hb_001797_050 Hb_001797_050 Hb_002150_030--Hb_001797_050 Hb_006649_060 Hb_006649_060 Hb_002150_030--Hb_006649_060 Hb_009411_010 Hb_009411_010 Hb_002150_030--Hb_009411_010 Hb_000048_140 Hb_000048_140 Hb_007407_040--Hb_000048_140 Hb_001366_040 Hb_001366_040 Hb_007407_040--Hb_001366_040 Hb_004195_280 Hb_004195_280 Hb_007407_040--Hb_004195_280 Hb_000179_020 Hb_000179_020 Hb_007407_040--Hb_000179_020 Hb_001504_160 Hb_001504_160 Hb_007407_040--Hb_001504_160 Hb_003362_040 Hb_003362_040 Hb_007407_040--Hb_003362_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.79052 4.98169 2.69387 2.20384 12.4602 15.9067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.94267 3.06042 7.80103 3.85869 5.03994

CAGE analysis