Hb_007108_030

Information

Type -
Description -
Location Contig7108: 17599-20043
Sequence    

Annotation

kegg
ID rcu:RCOM_0940800
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002514422.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID O81028
description Pentatricopeptide repeat-containing protein At2g26790, mitochondrial OS=Arabidopsis thaliana GN=At2g26790 PE=3 SV=1
trembl
ID B9RL03
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0940800 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007108_030 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_002150_030 0.0607196302 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
3 Hb_009411_010 0.0741359178 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
4 Hb_001797_050 0.0811799978 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
5 Hb_003428_070 0.0821881515 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
6 Hb_003506_080 0.0828312036 - - dipeptidyl peptidase IV, putative [Ricinus communis]
7 Hb_001866_110 0.0837058001 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
8 Hb_000173_510 0.0847668591 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
9 Hb_000101_240 0.0851346701 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
10 Hb_000977_180 0.0863045324 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
11 Hb_003544_100 0.0866953406 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
12 Hb_003052_150 0.087019755 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
13 Hb_003938_080 0.0874399058 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
14 Hb_009620_040 0.0874463877 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
15 Hb_011139_030 0.0902505983 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
16 Hb_000815_210 0.0910807956 - - uncoupling protein 3, partial [Manihot esculenta]
17 Hb_012670_140 0.0913910978 - - PREDICTED: pentatricopeptide repeat-containing protein At1g28690, mitochondrial [Jatropha curcas]
18 Hb_000951_110 0.0914766604 - - heat shock protein, putative [Ricinus communis]
19 Hb_005914_060 0.0916117307 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
20 Hb_000116_180 0.091967632 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007108_030 Hb_007108_030 Hb_002150_030 Hb_002150_030 Hb_007108_030--Hb_002150_030 Hb_009411_010 Hb_009411_010 Hb_007108_030--Hb_009411_010 Hb_001797_050 Hb_001797_050 Hb_007108_030--Hb_001797_050 Hb_003428_070 Hb_003428_070 Hb_007108_030--Hb_003428_070 Hb_003506_080 Hb_003506_080 Hb_007108_030--Hb_003506_080 Hb_001866_110 Hb_001866_110 Hb_007108_030--Hb_001866_110 Hb_007586_030 Hb_007586_030 Hb_002150_030--Hb_007586_030 Hb_000977_180 Hb_000977_180 Hb_002150_030--Hb_000977_180 Hb_002150_030--Hb_001797_050 Hb_006649_060 Hb_006649_060 Hb_002150_030--Hb_006649_060 Hb_002150_030--Hb_009411_010 Hb_003544_100 Hb_003544_100 Hb_009411_010--Hb_003544_100 Hb_000101_240 Hb_000101_240 Hb_009411_010--Hb_000101_240 Hb_003938_080 Hb_003938_080 Hb_009411_010--Hb_003938_080 Hb_009411_010--Hb_001797_050 Hb_048476_180 Hb_048476_180 Hb_009411_010--Hb_048476_180 Hb_000502_050 Hb_000502_050 Hb_009411_010--Hb_000502_050 Hb_004724_060 Hb_004724_060 Hb_001797_050--Hb_004724_060 Hb_000207_390 Hb_000207_390 Hb_001797_050--Hb_000207_390 Hb_007163_090 Hb_007163_090 Hb_001797_050--Hb_007163_090 Hb_004204_080 Hb_004204_080 Hb_001797_050--Hb_004204_080 Hb_000803_190 Hb_000803_190 Hb_001797_050--Hb_000803_190 Hb_000567_050 Hb_000567_050 Hb_003428_070--Hb_000567_050 Hb_016898_010 Hb_016898_010 Hb_003428_070--Hb_016898_010 Hb_003428_070--Hb_000101_240 Hb_000743_040 Hb_000743_040 Hb_003428_070--Hb_000743_040 Hb_000820_170 Hb_000820_170 Hb_003428_070--Hb_000820_170 Hb_000173_510 Hb_000173_510 Hb_003428_070--Hb_000173_510 Hb_003506_080--Hb_000977_180 Hb_009620_040 Hb_009620_040 Hb_003506_080--Hb_009620_040 Hb_000815_210 Hb_000815_210 Hb_003506_080--Hb_000815_210 Hb_003506_080--Hb_001866_110 Hb_002079_010 Hb_002079_010 Hb_003506_080--Hb_002079_010 Hb_000429_120 Hb_000429_120 Hb_001866_110--Hb_000429_120 Hb_005977_090 Hb_005977_090 Hb_001866_110--Hb_005977_090 Hb_000179_020 Hb_000179_020 Hb_001866_110--Hb_000179_020 Hb_002174_060 Hb_002174_060 Hb_001866_110--Hb_002174_060 Hb_001866_110--Hb_003428_070 Hb_000889_020 Hb_000889_020 Hb_001866_110--Hb_000889_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.07021 1.85806 1.04871 0.699753 3.71176 4.32253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.55666 1.83736 1.95408 1.53868 1.54326

CAGE analysis