Hb_000889_020

Information

Type -
Description -
Location Contig889: 42039-51702
Sequence    

Annotation

kegg
ID rcu:RCOM_1362610
description ribosome biogenesis protein brix, putative
nr
ID XP_002529740.1
description ribosome biogenesis protein brix, putative [Ricinus communis]
swissprot
ID Q4QQT6
description Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus GN=Brix1 PE=2 SV=1
trembl
ID B9SUS1
description Ribosome biogenesis protein brix, putative OS=Ricinus communis GN=RCOM_1362610 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61545: 44859-51658 , PASA_asmbl_61546: 44859-47127
cDNA
(Sanger)
(ID:Location)		 016_J19.ab1: 44859-46150

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000889_020 0.0 - - ribosome biogenesis protein brix, putative [Ricinus communis]
2 Hb_000373_240 0.0597016304 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
3 Hb_000166_110 0.0615505849 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 25 [Jatropha curcas]
4 Hb_007218_080 0.0692018677 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
5 Hb_011794_060 0.0715526796 - - PREDICTED: beta-amylase 2, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000179_020 0.0722703866 - - amidase, putative [Ricinus communis]
7 Hb_006692_030 0.0747333621 - - PREDICTED: uncharacterized protein LOC105632913 [Jatropha curcas]
8 Hb_004096_030 0.0748615758 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
9 Hb_002616_050 0.075004452 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
10 Hb_001866_110 0.0762794476 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
11 Hb_002030_030 0.0782266316 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
12 Hb_000627_030 0.0789591779 - - amine oxidase, putative [Ricinus communis]
13 Hb_000134_090 0.0805080437 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
14 Hb_002174_060 0.0807004836 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
15 Hb_004724_200 0.0814298917 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
16 Hb_000076_120 0.0816935009 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
17 Hb_012490_030 0.0828032589 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
18 Hb_004310_130 0.0833841708 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
19 Hb_002079_010 0.0834975142 - - hypothetical protein POPTR_0001s01970g [Populus trichocarpa]
20 Hb_009467_060 0.0845694243 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000889_020 Hb_000889_020 Hb_000373_240 Hb_000373_240 Hb_000889_020--Hb_000373_240 Hb_000166_110 Hb_000166_110 Hb_000889_020--Hb_000166_110 Hb_007218_080 Hb_007218_080 Hb_000889_020--Hb_007218_080 Hb_011794_060 Hb_011794_060 Hb_000889_020--Hb_011794_060 Hb_000179_020 Hb_000179_020 Hb_000889_020--Hb_000179_020 Hb_006692_030 Hb_006692_030 Hb_000889_020--Hb_006692_030 Hb_002391_300 Hb_002391_300 Hb_000373_240--Hb_002391_300 Hb_003406_010 Hb_003406_010 Hb_000373_240--Hb_003406_010 Hb_000373_240--Hb_007218_080 Hb_001789_240 Hb_001789_240 Hb_000373_240--Hb_001789_240 Hb_000690_130 Hb_000690_130 Hb_000373_240--Hb_000690_130 Hb_002054_040 Hb_002054_040 Hb_000166_110--Hb_002054_040 Hb_005839_060 Hb_005839_060 Hb_000166_110--Hb_005839_060 Hb_004370_030 Hb_004370_030 Hb_000166_110--Hb_004370_030 Hb_001124_160 Hb_001124_160 Hb_000166_110--Hb_001124_160 Hb_000076_120 Hb_000076_120 Hb_000166_110--Hb_000076_120 Hb_004310_130 Hb_004310_130 Hb_007218_080--Hb_004310_130 Hb_001369_180 Hb_001369_180 Hb_007218_080--Hb_001369_180 Hb_150360_030 Hb_150360_030 Hb_007218_080--Hb_150360_030 Hb_007218_080--Hb_003406_010 Hb_007218_080--Hb_002391_300 Hb_003030_070 Hb_003030_070 Hb_007218_080--Hb_003030_070 Hb_011794_060--Hb_000179_020 Hb_003602_040 Hb_003602_040 Hb_011794_060--Hb_003602_040 Hb_002174_060 Hb_002174_060 Hb_011794_060--Hb_002174_060 Hb_002079_010 Hb_002079_010 Hb_011794_060--Hb_002079_010 Hb_001017_040 Hb_001017_040 Hb_011794_060--Hb_001017_040 Hb_000179_020--Hb_002174_060 Hb_000179_020--Hb_002079_010 Hb_001866_110 Hb_001866_110 Hb_000179_020--Hb_001866_110 Hb_004195_280 Hb_004195_280 Hb_000179_020--Hb_004195_280 Hb_009133_010 Hb_009133_010 Hb_006692_030--Hb_009133_010 Hb_000032_570 Hb_000032_570 Hb_006692_030--Hb_000032_570 Hb_006692_030--Hb_007218_080 Hb_006692_030--Hb_001789_240 Hb_000120_500 Hb_000120_500 Hb_006692_030--Hb_000120_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.4221 22.6579 21.8396 24.623 54.3819 95.9193
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
69.9982 46.1649 41.8425 34.6773 35.4056

CAGE analysis