Hb_003602_040

Information

Type -
Description -
Location Contig3602: 30876-36016
Sequence    

Annotation

kegg
ID rcu:RCOM_0482340
description CBL-interacting serine/threonine-protein kinase, putative (EC:2.7.11.17)
nr
ID XP_002527344.1
description CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
swissprot
ID Q9STV4
description CBL-interacting serine/threonine-protein kinase 8 OS=Arabidopsis thaliana GN=CIPK8 PE=1 SV=1
trembl
ID B9SMX5
description Non-specific serine/threonine protein kinase OS=Ricinus communis GN=RCOM_0482340 PE=4 SV=1
Gene Ontology
ID GO:0005886
description cbl-interacting serine threonine-protein kinase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37105: 30916-35667 , PASA_asmbl_37106: 31548-35667 , PASA_asmbl_37107: 35733-35832
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003602_040 0.0 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
2 Hb_012760_170 0.0642292064 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
3 Hb_009118_010 0.0645403944 - - methionine aminopeptidase, putative [Ricinus communis]
4 Hb_000012_090 0.068741136 - - 3'-5' exonuclease, putative [Ricinus communis]
5 Hb_028639_060 0.070951348 - - transporter, putative [Ricinus communis]
6 Hb_000120_500 0.0724808526 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
7 Hb_006663_100 0.0742528942 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
8 Hb_011794_060 0.0767580284 - - PREDICTED: beta-amylase 2, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_003728_030 0.0770046285 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
10 Hb_000956_030 0.0780828043 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
11 Hb_003434_060 0.0787843791 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
12 Hb_001329_230 0.0791764066 - - PREDICTED: peptide chain release factor 1-like, mitochondrial [Jatropha curcas]
13 Hb_000179_020 0.0815888225 - - amidase, putative [Ricinus communis]
14 Hb_002030_030 0.0824613381 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
15 Hb_022137_060 0.0833131627 - - 1-acylglycerophosphocholine O-acyltransferase [Vernicia fordii]
16 Hb_000300_280 0.0838862605 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
17 Hb_000803_300 0.0844133037 - - nuclear movement protein nudc, putative [Ricinus communis]
18 Hb_002097_090 0.0848482604 - - Splicing factor 3A subunit, putative [Ricinus communis]
19 Hb_000370_030 0.084869502 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
20 Hb_000322_050 0.0853656288 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_003602_040 Hb_003602_040 Hb_012760_170 Hb_012760_170 Hb_003602_040--Hb_012760_170 Hb_009118_010 Hb_009118_010 Hb_003602_040--Hb_009118_010 Hb_000012_090 Hb_000012_090 Hb_003602_040--Hb_000012_090 Hb_028639_060 Hb_028639_060 Hb_003602_040--Hb_028639_060 Hb_000120_500 Hb_000120_500 Hb_003602_040--Hb_000120_500 Hb_006663_100 Hb_006663_100 Hb_003602_040--Hb_006663_100 Hb_012760_170--Hb_006663_100 Hb_022137_060 Hb_022137_060 Hb_012760_170--Hb_022137_060 Hb_000184_110 Hb_000184_110 Hb_012760_170--Hb_000184_110 Hb_000120_800 Hb_000120_800 Hb_012760_170--Hb_000120_800 Hb_001017_040 Hb_001017_040 Hb_012760_170--Hb_001017_040 Hb_004608_020 Hb_004608_020 Hb_009118_010--Hb_004608_020 Hb_009118_010--Hb_000012_090 Hb_000322_050 Hb_000322_050 Hb_009118_010--Hb_000322_050 Hb_003434_060 Hb_003434_060 Hb_009118_010--Hb_003434_060 Hb_000956_030 Hb_000956_030 Hb_009118_010--Hb_000956_030 Hb_000012_090--Hb_028639_060 Hb_006922_080 Hb_006922_080 Hb_000012_090--Hb_006922_080 Hb_003728_020 Hb_003728_020 Hb_000012_090--Hb_003728_020 Hb_003453_020 Hb_003453_020 Hb_000012_090--Hb_003453_020 Hb_002014_080 Hb_002014_080 Hb_000012_090--Hb_002014_080 Hb_001214_130 Hb_001214_130 Hb_028639_060--Hb_001214_130 Hb_003642_060 Hb_003642_060 Hb_028639_060--Hb_003642_060 Hb_000236_370 Hb_000236_370 Hb_028639_060--Hb_000236_370 Hb_000803_300 Hb_000803_300 Hb_028639_060--Hb_000803_300 Hb_001030_120 Hb_001030_120 Hb_028639_060--Hb_001030_120 Hb_000120_500--Hb_000956_030 Hb_000120_500--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_000120_500--Hb_000390_060 Hb_005883_050 Hb_005883_050 Hb_000120_500--Hb_005883_050 Hb_000120_500--Hb_028639_060 Hb_004198_010 Hb_004198_010 Hb_000120_500--Hb_004198_010 Hb_006663_100--Hb_022137_060 Hb_007894_140 Hb_007894_140 Hb_006663_100--Hb_007894_140 Hb_007590_080 Hb_007590_080 Hb_006663_100--Hb_007590_080 Hb_001329_230 Hb_001329_230 Hb_006663_100--Hb_001329_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.6086 7.33818 4.53574 6.51329 25.5654 35.8106
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.9839 14.2231 14.9433 13.1701 7.7707

CAGE analysis