Hb_006663_100

Information

Type -
Description -
Location Contig6663: 130530-138982
Sequence    

Annotation

kegg
ID rcu:RCOM_0205670
description nucleolysin tia-1, putative
nr
ID KDP33409.1
description hypothetical protein JCGZ_06980 [Jatropha curcas]
swissprot
ID Q9M427
description Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia GN=UBP1 PE=2 SV=1
trembl
ID A0A067KNM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06980 PE=4 SV=1
Gene Ontology
ID GO:0000166
description oligouridylate-binding protein 1b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53266: 130511-138953 , PASA_asmbl_53267: 130511-136007 , PASA_asmbl_53268: 136299-138953 , PASA_asmbl_53269: 136847-137118
cDNA
(Sanger)
(ID:Location)		 027_H02.ab1: 137988-138890 , 034_F08.ab1: 137988-138890

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006663_100 0.0 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
2 Hb_022137_060 0.0728859196 - - 1-acylglycerophosphocholine O-acyltransferase [Vernicia fordii]
3 Hb_003602_040 0.0742528942 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
4 Hb_007894_140 0.0752768717 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
5 Hb_012760_170 0.0784893445 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
6 Hb_007590_080 0.0825382131 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
7 Hb_001329_230 0.0852926918 - - PREDICTED: peptide chain release factor 1-like, mitochondrial [Jatropha curcas]
8 Hb_000009_170 0.0862865291 - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative [Ricinus communis]
9 Hb_000879_140 0.0888249145 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
10 Hb_009118_010 0.0897243419 - - methionine aminopeptidase, putative [Ricinus communis]
11 Hb_000300_280 0.0912930446 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
12 Hb_000803_300 0.0913885068 - - nuclear movement protein nudc, putative [Ricinus communis]
13 Hb_000457_060 0.0917444985 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
14 Hb_004310_060 0.093238528 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_076787_010 0.0952290912 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
16 Hb_003656_130 0.0957038791 - - PREDICTED: protein bem46 isoform X2 [Jatropha curcas]
17 Hb_000529_160 0.0961628218 - - PREDICTED: uncharacterized protein At1g04910 [Populus euphratica]
18 Hb_000370_030 0.0964338918 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
19 Hb_000120_800 0.0972594914 - - PREDICTED: rab proteins geranylgeranyltransferase component A [Jatropha curcas]
20 Hb_026099_010 0.0973361199 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006663_100 Hb_006663_100 Hb_022137_060 Hb_022137_060 Hb_006663_100--Hb_022137_060 Hb_003602_040 Hb_003602_040 Hb_006663_100--Hb_003602_040 Hb_007894_140 Hb_007894_140 Hb_006663_100--Hb_007894_140 Hb_012760_170 Hb_012760_170 Hb_006663_100--Hb_012760_170 Hb_007590_080 Hb_007590_080 Hb_006663_100--Hb_007590_080 Hb_001329_230 Hb_001329_230 Hb_006663_100--Hb_001329_230 Hb_010120_030 Hb_010120_030 Hb_022137_060--Hb_010120_030 Hb_000120_800 Hb_000120_800 Hb_022137_060--Hb_000120_800 Hb_000359_170 Hb_000359_170 Hb_022137_060--Hb_000359_170 Hb_000009_170 Hb_000009_170 Hb_022137_060--Hb_000009_170 Hb_022137_060--Hb_012760_170 Hb_003602_040--Hb_012760_170 Hb_009118_010 Hb_009118_010 Hb_003602_040--Hb_009118_010 Hb_000012_090 Hb_000012_090 Hb_003602_040--Hb_000012_090 Hb_028639_060 Hb_028639_060 Hb_003602_040--Hb_028639_060 Hb_000120_500 Hb_000120_500 Hb_003602_040--Hb_000120_500 Hb_033153_050 Hb_033153_050 Hb_007894_140--Hb_033153_050 Hb_007894_140--Hb_007590_080 Hb_007218_080 Hb_007218_080 Hb_007894_140--Hb_007218_080 Hb_001862_190 Hb_001862_190 Hb_007894_140--Hb_001862_190 Hb_007336_020 Hb_007336_020 Hb_007894_140--Hb_007336_020 Hb_000184_110 Hb_000184_110 Hb_012760_170--Hb_000184_110 Hb_012760_170--Hb_000120_800 Hb_001017_040 Hb_001017_040 Hb_012760_170--Hb_001017_040 Hb_007590_080--Hb_007336_020 Hb_002007_350 Hb_002007_350 Hb_007590_080--Hb_002007_350 Hb_008253_010 Hb_008253_010 Hb_007590_080--Hb_008253_010 Hb_000100_070 Hb_000100_070 Hb_007590_080--Hb_000100_070 Hb_000803_300 Hb_000803_300 Hb_007590_080--Hb_000803_300 Hb_001329_230--Hb_003602_040 Hb_009775_050 Hb_009775_050 Hb_001329_230--Hb_009775_050 Hb_076787_010 Hb_076787_010 Hb_001329_230--Hb_076787_010 Hb_001329_230--Hb_022137_060 Hb_001329_230--Hb_009118_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
91.6998 22.2915 17.763 28.1966 74.4227 84.9742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
87.8262 28.4606 41.4973 38.8152 21.9514

CAGE analysis