Hb_000009_170

Information

Type -
Description -
Location Contig9: 168985-175971
Sequence    

Annotation

kegg
ID rcu:RCOM_0553160
description dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative (EC:2.4.1.119)
nr
ID XP_002525097.1
description dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative [Ricinus communis]
swissprot
ID Q944K2
description Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit OS=Arabidopsis thaliana GN=OST48 PE=2 SV=1
trembl
ID B9SGH8
description Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit OS=Ricinus communis GN=RCOM_0553160 PE=3 SV=1
Gene Ontology
ID GO:0005730
description dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kda subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61848: 168974-175950 , PASA_asmbl_61849: 174010-174112
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_170 0.0 - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative [Ricinus communis]
2 Hb_001001_060 0.0683500372 - - -
3 Hb_000620_010 0.0739195771 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
4 Hb_009838_100 0.0765434929 - - hypothetical protein RCOM_1217340 [Ricinus communis]
5 Hb_000120_800 0.0771108266 - - PREDICTED: rab proteins geranylgeranyltransferase component A [Jatropha curcas]
6 Hb_022137_060 0.0792643209 - - 1-acylglycerophosphocholine O-acyltransferase [Vernicia fordii]
7 Hb_000331_210 0.0822491486 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
8 Hb_005306_110 0.0829906725 - - casein kinase, putative [Ricinus communis]
9 Hb_001006_170 0.083465815 - - Endonuclease V, putative [Ricinus communis]
10 Hb_007894_140 0.0843662012 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
11 Hb_039837_010 0.0847020977 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
12 Hb_002811_360 0.085502915 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
13 Hb_006663_100 0.0862865291 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
14 Hb_001604_010 0.088055772 - - 14-3-3 protein, putative [Ricinus communis]
15 Hb_033153_050 0.0897529792 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
16 Hb_010120_030 0.0907121568 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
17 Hb_000436_070 0.0907837662 - - PREDICTED: V-type proton ATPase subunit B 2 [Jatropha curcas]
18 Hb_001584_330 0.0916289988 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
19 Hb_033843_010 0.0918835979 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
20 Hb_000120_950 0.0919775657 - - PREDICTED: protein GRIP [Jatropha curcas]

Gene co-expression network

sample Hb_000009_170 Hb_000009_170 Hb_001001_060 Hb_001001_060 Hb_000009_170--Hb_001001_060 Hb_000620_010 Hb_000620_010 Hb_000009_170--Hb_000620_010 Hb_009838_100 Hb_009838_100 Hb_000009_170--Hb_009838_100 Hb_000120_800 Hb_000120_800 Hb_000009_170--Hb_000120_800 Hb_022137_060 Hb_022137_060 Hb_000009_170--Hb_022137_060 Hb_000331_210 Hb_000331_210 Hb_000009_170--Hb_000331_210 Hb_004225_020 Hb_004225_020 Hb_001001_060--Hb_004225_020 Hb_001001_060--Hb_000120_800 Hb_004204_020 Hb_004204_020 Hb_001001_060--Hb_004204_020 Hb_000190_140 Hb_000190_140 Hb_001001_060--Hb_000190_140 Hb_002027_120 Hb_002027_120 Hb_001001_060--Hb_002027_120 Hb_000120_950 Hb_000120_950 Hb_000620_010--Hb_000120_950 Hb_000436_070 Hb_000436_070 Hb_000620_010--Hb_000436_070 Hb_005662_030 Hb_005662_030 Hb_000620_010--Hb_005662_030 Hb_004724_200 Hb_004724_200 Hb_000620_010--Hb_004724_200 Hb_000699_140 Hb_000699_140 Hb_000620_010--Hb_000699_140 Hb_009838_100--Hb_000331_210 Hb_000179_130 Hb_000179_130 Hb_009838_100--Hb_000179_130 Hb_000062_240 Hb_000062_240 Hb_009838_100--Hb_000062_240 Hb_082609_020 Hb_082609_020 Hb_009838_100--Hb_082609_020 Hb_000418_100 Hb_000418_100 Hb_009838_100--Hb_000418_100 Hb_001840_080 Hb_001840_080 Hb_000120_800--Hb_001840_080 Hb_005306_110 Hb_005306_110 Hb_000120_800--Hb_005306_110 Hb_001017_040 Hb_001017_040 Hb_000120_800--Hb_001017_040 Hb_000134_090 Hb_000134_090 Hb_000120_800--Hb_000134_090 Hb_000120_800--Hb_022137_060 Hb_006663_100 Hb_006663_100 Hb_022137_060--Hb_006663_100 Hb_010120_030 Hb_010120_030 Hb_022137_060--Hb_010120_030 Hb_000359_170 Hb_000359_170 Hb_022137_060--Hb_000359_170 Hb_012760_170 Hb_012760_170 Hb_022137_060--Hb_012760_170 Hb_000331_210--Hb_000179_130 Hb_030116_020 Hb_030116_020 Hb_000331_210--Hb_030116_020 Hb_039837_010 Hb_039837_010 Hb_000331_210--Hb_039837_010 Hb_002811_360 Hb_002811_360 Hb_000331_210--Hb_002811_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
220.589 60.7639 49.0092 85.2979 172.153 185.15
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
180.154 89.8857 159.989 103.491 34.0637

CAGE analysis